Mercurial > repos > imgteam > image_registration_affine

view image_registration_affine.xml @ 0:e34222a620d4 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/image_registration_affine/ commit 79c2fd560fce8ded4d7f7fe97e876871794e2f9d"
author imgteam
date Wed, 30 Dec 2020 20:24:35 +0000
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children fa769715b6b0
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<tool id="ip_image_registration" name="Image Registration" version="0.0.1"> 
    <description>based on intensity information</description>
    <requirements>
        <requirement type="package" version="0.14.2">scikit-image</requirement>
        <requirement type="package" version="1.1.0">scipy</requirement>
        <requirement type="package" version="0.23.4">pandas</requirement>
        <requirement type="package" version="1.15.2">numpy</requirement>
        <requirement type="package" version="0.15.1">tifffile</requirement>
    </requirements>
    <command>
    <![CDATA[
         python '$__tool_directory__/image_registration_affine.py'
         '$fn_moving'
         '$fn_fixed'
         '$fn_tmat'
    ]]>
    </command>
    <inputs>
        <param name="fn_moving" type="data" format="png" label="Moving Image" />
        <param name="fn_fixed"  type="data" format="png" label="Fixed Image" />
    </inputs>
    <outputs>
       <data format="tabular" name="fn_tmat" />
    </outputs>
    <tests>
      <test>
        <param name="fn_moving" value="moving.png"/>
        <param name="fn_fixed" value="fixed.png"/>
        <output name="fn_tmat" value="tmat.tsv" ftype="tabular" compare="diff" lines_diff="6"/>
      </test>
    </tests>
    <help>
    **What it does**

    This tool estimates the (affine) transformation matrix for registration of two images based on intensity information. 
    </help>
</tool>