comparison imagej2_macros.xml @ 1:29a4d422f32a draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 2afb24f3c81d625312186750a714d702363012b5"

0:f1ba33cd9edf

<?xml version='1.0' encoding='UTF-8'?>
<macros>
    <token name="@WRAPPER_VERSION@">3.0</token>
    <xml name="fiji_requirements">
        <requirements>
            <requirement type="package" version="20170530">fiji</requirement>
        </requirements>
    </xml>
    <xml name="stdio">
        <stdio>
            <exit_code range="1:"/>

            <regex match="Exception:"/>
        </stdio>
    </xml>
    <xml name="image_type">
        <param name="image_type" type="select" label="Image type">
            <option value="8-bit_white" selected="True">8-bit white</option>
            <option value="8-bit_black">8-bit black</option>
            <option value="8-bit_random">8-bit random</option>
            <option value="8-bit_ramp">8-bit ramp</option>
            <option value="16-bit_white">16-bit white</option>
            <option value="16-bit_black">16-bit black</option>

    </xml>
    <xml name="make_binary_params">
        <param name="iterations" type="integer" value="1" min="1" max="100" label="Iterations" help="The number of times (1-100) erosion, dilation, opening, and closing are performed."/>
        <param name="count" type="integer" value="1" min="1" max="8" label="Count" help="The number of adjacent background pixels necessary (1-8) for erosion or dilation."/>
        <param name="black_background" type="select" label="Black background" help="If Yes, the background is black and the foreground is white (no implies the opposite).">
            <option value="no" selected="True">No</option>
            <option value="yes">Yes</option>
        </param>
        <param name="pad_edges_when_eroding" type="select" label="Pad edges when eroding" help="If Yes, eroding does not erode from the edges of the image.">
            <option value="no" selected="True">No</option>
            <option value="yes">Yes</option>
        </param>
    </xml>
    <xml name="black_background_param">
        <param name="black_background" type="select" label="Black background" help="If Yes, the background is black and the foreground is white (no implies the opposite).">
            <option value="no" selected="True">No</option>
            <option value="yes">Yes</option>
        </param>
    </xml>
    <token name="@make_binary_args@">
        --iterations $iterations
        --count $count
        --black_background $black_background

1:29a4d422f32a

<macros>
    <token name="@WRAPPER_VERSION@">3.0</token>
    <xml name="fiji_requirements">
        <requirements>
            <requirement type="package" version="20170530">fiji</requirement>
            <requirement type="package" version="3.4">grep</requirement>
        </requirements>
    </xml>
    <xml name="stdio">
        <stdio>
            <exit_code range="1:"/>

            <regex match="Exception:"/>
        </stdio>
    </xml>
    <xml name="image_type">
        <param name="image_type" type="select" label="Image type">
            <option value="8-bit_white" selected="true">8-bit white</option>
            <option value="8-bit_black">8-bit black</option>
            <option value="8-bit_random">8-bit random</option>
            <option value="8-bit_ramp">8-bit ramp</option>
            <option value="16-bit_white">16-bit white</option>
            <option value="16-bit_black">16-bit black</option>

    </xml>
    <xml name="make_binary_params">
        <param name="iterations" type="integer" value="1" min="1" max="100" label="Iterations" help="The number of times (1-100) erosion, dilation, opening, and closing are performed."/>
        <param name="count" type="integer" value="1" min="1" max="8" label="Count" help="The number of adjacent background pixels necessary (1-8) for erosion or dilation."/>
        <param name="black_background" type="select" label="Black background" help="If Yes, the background is black and the foreground is white (no implies the opposite).">
            <option value="no" selected="true">No</option>
            <option value="yes">Yes</option>
        </param>
        <param name="pad_edges_when_eroding" type="select" label="Pad edges when eroding" help="If Yes, eroding does not erode from the edges of the image.">
            <option value="no" selected="true">No</option>
            <option value="yes">Yes</option>
        </param>
    </xml>
    <xml name="black_background_param">
        <param name="black_background" type="select" label="Black background" help="If Yes, the background is black and the foreground is white (no implies the opposite).">
            <option value="no" selected="true">No</option>
            <option value="yes">Yes</option>
        </param>
    </xml>
    <xml name="param_input">
        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/>
    </xml>
    <xml name="param_source_image">
        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/>
    </xml>
    <xml name="param_source_mask">
        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_mask" type="data" label="Source mask"/>
    </xml>
    <xml name="param_target_image">
        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/>
    </xml>
    <xml name="param_target_mask">
        <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_mask" type="data" label="Target mask"/>
    </xml>
    <xml name="test_bunwarpj_raw_transform">
        <param name="target_image" value="dotblot.jpg"/>
        <param name="source_image" value="blobs.gif"/>
        <param name="target_raw_transformation" value="target_raw_transformation.txt"/>
        <param name="source_raw_transformation" value="source_raw_transformation.txt"/>
    </xml>
    <xml name="test_target_source_images">
        <param name="target_image" value="dotblot.jpg"/>
        <param name="source_image" value="blobs.gif"/>
    </xml>
    <token name="@make_binary_args@">
        --iterations $iterations
        --count $count
        --black_background $black_background