Mercurial > repos > imgteam > imagej2_analyze_particles_binary
comparison imagej2_analyze_particles_binary.xml @ 2:ae4ae9c5c56c draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | imgteam |
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date | Sun, 05 Nov 2023 14:25:37 +0000 |
parents | 1dd5396c734a |
children | 862af85a50ec |
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1:1dd5396c734a | 2:ae4ae9c5c56c |
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1 <tool id="imagej2_analyze_particles_binary" name="Analyze particles" version="@WRAPPER_VERSION@.0"> | 1 <tool id="imagej2_analyze_particles_binary" name="Analyze particles" version="@WRAPPER_VERSION@.1"> |
2 <description>of binary image</description> | 2 <description>with ImageJ2</description> |
3 <macros> | 3 <macros> |
4 <import>imagej2_macros.xml</import> | 4 <import>imagej2_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <edam_operations> | |
7 <edam_operation>operation_3443</edam_operation> | |
8 </edam_operations> | |
9 <xrefs> | |
10 <xref type="bio.tools">imagej</xref> | |
11 <xref type="biii">imagej2</xref> | |
12 </xrefs> | |
6 <expand macro="fiji_requirements"/> | 13 <expand macro="fiji_requirements"/> |
7 <command detect_errors="exit_code"><![CDATA[ | 14 <command detect_errors="exit_code"><![CDATA[ |
8 #import os | 15 #import os |
9 #set input_sans_ext = $os.path.splitext($os.path.basename($input.file_name))[0] | 16 #set input_sans_ext = $os.path.splitext($os.path.basename($input.file_name))[0] |
10 #set input_with_ext = '.'.join([input_sans_ext, $input.ext]) | 17 #set input_with_ext = '.'.join([input_sans_ext, $input.ext]) |