Mercurial > repos > imgteam > imagej2_analyze_particles_binary

comparison imagej2_create_image_jython_script.py @ 2:ae4ae9c5c56c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 14:25:37 +0000
parents 1dd5396c734a
children
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1:1dd5396c734a 2:ae4ae9c5c56c
6 # provide support for argparse. 6 # provide support for argparse.
7 title = sys.argv[-6] 7 title = sys.argv[-6]
8 width = int(sys.argv[-5]) 8 width = int(sys.argv[-5])
9 height = int(sys.argv[-4]) 9 height = int(sys.argv[-4])
10 depth = int(sys.argv[-3]) 10 depth = int(sys.argv[-3])
11 type = sys.argv[-2].replace('_', ' ') 11 type = sys.argv[-2].replace("_", " ")
12 tmp_image_path = sys.argv[-1] 12 tmp_image_path = sys.argv[-1]
13 13
14 imp = IJ.newImage(title, type, width, height, depth) 14 imp = IJ.newImage(title, type, width, height, depth)
15 IJ.save(imp, "%s" % tmp_image_path) 15 IJ.save(imp, "%s" % tmp_image_path)