Mercurial > repos > imgteam > imagej2_analyze_particles_binary
comparison imagej2_math_jython_script.py @ 3:862af85a50ec draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author | imgteam |
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date | Wed, 25 Sep 2024 16:13:47 +0000 |
parents | ae4ae9c5c56c |
children |
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2:ae4ae9c5c56c | 3:862af85a50ec |
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1 import sys | 1 import sys |
2 | 2 |
3 from ij import IJ | 3 from ij import IJ |
4 | 4 |
5 # Fiji Jython interpreter implements Python 2.5 which does not | 5 # Fiji Jython interpreter implements Python 2.5 which does not |
6 # provide support for argparse. | 6 # provide support for argparse.\ |
7 error_log = sys.argv[-8] | |
8 input_file = sys.argv[-7] | 7 input_file = sys.argv[-7] |
9 operation = sys.argv[-6] | 8 operation = sys.argv[-6] |
10 expression = sys.argv[-5] | 9 expression = sys.argv[-5] |
11 if sys.argv[-4] in [None, "None"]: | 10 if sys.argv[-4] in [None, "None"]: |
12 bin_constant = None | 11 bin_constant = None |
17 else: | 16 else: |
18 float_constant = float(sys.argv[-3]) | 17 float_constant = float(sys.argv[-3]) |
19 tmp_output_path = sys.argv[-2] | 18 tmp_output_path = sys.argv[-2] |
20 output_datatype = sys.argv[-1] | 19 output_datatype = sys.argv[-1] |
21 | 20 |
22 print("\nerror_log: %s\n" % str(error_log)) | |
23 print("\ninput_file: %s\n" % str(input_file)) | 21 print("\ninput_file: %s\n" % str(input_file)) |
24 print("\noperation: %s\n" % str(operation)) | 22 print("\noperation: %s\n" % str(operation)) |
25 print("\nexpression: %s\n" % str(expression)) | 23 print("\nexpression: %s\n" % str(expression)) |
26 print("\nbin_constant: %s\n" % str(bin_constant)) | 24 print("\nbin_constant: %s\n" % str(bin_constant)) |
27 print("\nfloat_constant: %s\n" % str(float_constant)) | 25 print("\nfloat_constant: %s\n" % str(float_constant)) |