Mercurial > repos > imgteam > imagej2_binary_to_edm
diff imagej2_macros.xml @ 1:33f6b1f921e7 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 2afb24f3c81d625312186750a714d702363012b5"
author | imgteam |
---|---|
date | Mon, 28 Sep 2020 16:55:57 +0000 |
parents | f62303e87275 |
children |
line wrap: on
line diff
--- a/imagej2_macros.xml Tue Sep 17 16:54:50 2019 -0400 +++ b/imagej2_macros.xml Mon Sep 28 16:55:57 2020 +0000 @@ -1,9 +1,9 @@ -<?xml version='1.0' encoding='UTF-8'?> <macros> <token name="@WRAPPER_VERSION@">3.0</token> <xml name="fiji_requirements"> <requirements> <requirement type="package" version="20170530">fiji</requirement> + <requirement type="package" version="3.4">grep</requirement> </requirements> </xml> <xml name="stdio"> @@ -16,7 +16,7 @@ </xml> <xml name="image_type"> <param name="image_type" type="select" label="Image type"> - <option value="8-bit_white" selected="True">8-bit white</option> + <option value="8-bit_white" selected="true">8-bit white</option> <option value="8-bit_black">8-bit black</option> <option value="8-bit_random">8-bit random</option> <option value="8-bit_ramp">8-bit ramp</option> @@ -38,20 +38,45 @@ <param name="iterations" type="integer" value="1" min="1" max="100" label="Iterations" help="The number of times (1-100) erosion, dilation, opening, and closing are performed."/> <param name="count" type="integer" value="1" min="1" max="8" label="Count" help="The number of adjacent background pixels necessary (1-8) for erosion or dilation."/> <param name="black_background" type="select" label="Black background" help="If Yes, the background is black and the foreground is white (no implies the opposite)."> - <option value="no" selected="True">No</option> + <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> <param name="pad_edges_when_eroding" type="select" label="Pad edges when eroding" help="If Yes, eroding does not erode from the edges of the image."> - <option value="no" selected="True">No</option> + <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> </xml> <xml name="black_background_param"> <param name="black_background" type="select" label="Black background" help="If Yes, the background is black and the foreground is white (no implies the opposite)."> - <option value="no" selected="True">No</option> + <option value="no" selected="true">No</option> <option value="yes">Yes</option> </param> </xml> + <xml name="param_input"> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="input" type="data" label="Select image"/> + </xml> + <xml name="param_source_image"> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/> + </xml> + <xml name="param_source_mask"> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_mask" type="data" label="Source mask"/> + </xml> + <xml name="param_target_image"> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/> + </xml> + <xml name="param_target_mask"> + <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_mask" type="data" label="Target mask"/> + </xml> + <xml name="test_bunwarpj_raw_transform"> + <param name="target_image" value="dotblot.jpg"/> + <param name="source_image" value="blobs.gif"/> + <param name="target_raw_transformation" value="target_raw_transformation.txt"/> + <param name="source_raw_transformation" value="source_raw_transformation.txt"/> + </xml> + <xml name="test_target_source_images"> + <param name="target_image" value="dotblot.jpg"/> + <param name="source_image" value="blobs.gif"/> + </xml> <token name="@make_binary_args@"> --iterations $iterations --count $count