Mercurial > repos > imgteam > imagej2_binary_to_edm
diff test-data/analyze_particles_rois.tabular @ 3:91b8f4730a93 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
| author | imgteam |
|---|---|
| date | Wed, 25 Sep 2024 16:07:20 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/analyze_particles_rois.tabular Wed Sep 25 16:07:20 2024 +0000 @@ -0,0 +1,64 @@ +shape points label t z +Polygon (20,1),(19,1),(19,2),(18,2),(18,3),(17,3),(17,4),(16,4),(16,8),(15,8),(15,11),(14,11),(14,14),(13,14),(13,15),(12,15),(12,16),(11,16),(11,17),(8,17),(8,16),(7,16),(7,15),(6,15),(6,7),(7,7),(7,5),(8,5),(8,4),(9,4),(9,3),(10,3),(10,1),(11,1),(11,0),(20,0) ROI_0 0 0 +Polygon (42,2),(41,2),(41,4),(40,4),(40,5),(38,5),(38,6),(32,6),(32,5),(31,5),(31,3),(30,3),(30,0),(42,0) ROI_1 0 0 +Polygon (68,2),(69,2),(69,3),(68,3),(68,6),(69,6),(69,9),(68,9),(68,12),(67,12),(67,14),(66,14),(66,15),(64,15),(64,16),(59,16),(59,15),(57,15),(57,14),(56,14),(56,13),(55,13),(55,11),(54,11),(54,2),(55,2),(55,0),(68,0) ROI_2 0 0 +Polygon (93,3),(94,3),(94,6),(93,6),(93,9),(92,9),(92,10),(91,10),(91,11),(90,11),(90,12),(89,12),(89,13),(84,13),(84,12),(83,12),(83,10),(82,10),(82,8),(81,8),(81,1),(82,1),(82,0),(93,0) ROI_3 0 0 +Polygon (144,15),(142,15),(142,16),(139,16),(139,17),(138,17),(138,16),(136,16),(136,15),(135,15),(135,13),(134,13),(134,8),(133,8),(133,7),(134,7),(134,3),(135,3),(135,1),(136,1),(136,0),(144,0) ROI_4 0 0 +Polygon (114,5),(115,5),(115,6),(116,6),(116,7),(117,7),(117,8),(116,8),(116,11),(115,11),(115,13),(114,13),(114,14),(112,14),(112,15),(109,15),(109,14),(108,14),(108,13),(107,13),(107,11),(106,11),(106,8),(107,8),(107,6),(108,6),(108,5),(109,5),(109,4),(114,4) ROI_5 0 0 +Polygon (28,11),(29,11),(29,13),(30,13),(30,16),(29,16),(29,18),(28,18),(28,20),(23,20),(23,19),(22,19),(22,17),(21,17),(21,12),(22,12),(22,11),(24,11),(24,10),(28,10) ROI_6 0 0 +Polygon (80,14),(79,14),(79,15),(78,15),(78,16),(76,16),(76,15),(75,15),(75,11),(76,11),(76,10),(80,10) ROI_7 0 0 +Polygon (126,13),(127,13),(127,15),(128,15),(128,19),(127,19),(127,20),(126,20),(126,21),(125,21),(125,22),(121,22),(121,21),(120,21),(120,20),(119,20),(119,14),(120,14),(120,12),(121,12),(121,10),(126,10) ROI_8 0 0 +Polygon (1,15),(2,15),(2,17),(1,17),(1,19),(0,19),(0,12),(1,12) ROI_9 0 0 +Polygon (101,13),(103,13),(103,14),(104,14),(104,16),(105,16),(105,21),(104,21),(104,23),(103,23),(103,24),(102,24),(102,25),(101,25),(101,26),(100,26),(100,27),(97,27),(97,26),(95,26),(95,25),(94,25),(94,24),(93,24),(93,23),(92,23),(92,21),(91,21),(91,18),(92,18),(92,15),(93,15),(93,14),(94,14),(94,13),(95,13),(95,12),(101,12) ROI_10 0 0 +Polygon (47,17),(48,17),(48,18),(49,18),(49,21),(48,21),(48,22),(49,22),(49,27),(48,27),(48,28),(47,28),(47,29),(46,29),(46,30),(45,30),(45,31),(43,31),(43,32),(37,32),(37,31),(35,31),(35,30),(34,30),(34,28),(33,28),(33,26),(34,26),(34,23),(35,23),(35,21),(36,21),(36,19),(37,19),(37,18),(38,18),(38,17),(39,17),(39,16),(40,16),(40,15),(47,15) ROI_11 0 0 +Polygon (6,23),(7,23),(7,28),(6,28),(6,29),(3,29),(3,28),(2,28),(2,24),(3,24),(3,23),(4,23),(4,22),(6,22) ROI_12 0 0 +Polygon (134,23),(135,23),(135,24),(136,24),(136,28),(135,28),(135,31),(134,31),(134,32),(129,32),(129,30),(128,30),(128,29),(127,29),(127,24),(128,24),(128,23),(130,23),(130,22),(134,22) ROI_13 0 0 +Polygon (81,25),(82,25),(82,27),(83,27),(83,28),(84,28),(84,35),(83,35),(83,37),(82,37),(82,38),(80,38),(80,39),(78,39),(78,38),(75,38),(75,37),(74,37),(74,36),(73,36),(73,34),(72,34),(72,28),(73,28),(73,26),(74,26),(74,25),(76,25),(76,24),(81,24) ROI_14 0 0 +Polygon (114,25),(115,25),(115,32),(114,32),(114,34),(113,34),(113,36),(112,36),(112,40),(111,40),(111,41),(110,41),(110,42),(109,42),(109,43),(107,43),(107,42),(105,42),(105,41),(104,41),(104,36),(105,36),(105,34),(106,34),(106,33),(107,33),(107,31),(108,31),(108,28),(109,28),(109,26),(110,26),(110,25),(112,25),(112,24),(114,24) ROI_15 0 0 +Polygon (18,26),(20,26),(20,27),(21,27),(21,28),(22,28),(22,29),(23,29),(23,34),(22,34),(22,37),(21,37),(21,38),(20,38),(20,39),(19,39),(19,40),(15,40),(15,41),(14,41),(14,40),(12,40),(12,39),(11,39),(11,38),(10,38),(10,30),(11,30),(11,28),(12,28),(12,27),(13,27),(13,26),(14,26),(14,25),(18,25) ROI_16 0 0 +Polygon (59,35),(61,35),(61,45),(60,45),(60,47),(59,47),(59,48),(58,48),(58,49),(53,49),(53,48),(51,48),(51,46),(50,46),(50,41),(51,41),(51,39),(52,39),(52,37),(53,37),(53,36),(54,36),(54,35),(55,35),(55,34),(59,34) ROI_17 0 0 +Polygon (123,35),(124,35),(124,36),(125,36),(125,43),(124,43),(124,44),(123,44),(123,45),(122,45),(122,46),(118,46),(118,45),(117,45),(117,44),(116,44),(116,39),(117,39),(117,37),(118,37),(118,36),(119,36),(119,35),(120,35),(120,34),(123,34) ROI_18 0 0 +Polygon (142,37),(143,37),(143,38),(144,38),(144,44),(143,44),(143,45),(142,45),(142,46),(141,46),(141,47),(140,47),(140,48),(139,48),(139,47),(134,47),(134,46),(133,46),(133,44),(132,44),(132,40),(133,40),(133,39),(134,39),(134,38),(135,38),(135,37),(137,37),(137,36),(142,36) ROI_19 0 0 +Polygon (96,38),(97,38),(97,39),(98,39),(98,43),(97,43),(97,45),(95,45),(95,46),(92,46),(92,45),(91,45),(91,39),(92,39),(92,38),(93,38),(93,37),(96,37) ROI_20 0 0 +Polygon (39,42),(40,42),(40,43),(41,43),(41,44),(42,44),(42,51),(41,51),(41,53),(40,53),(40,54),(38,54),(38,55),(34,55),(34,54),(33,54),(33,52),(31,52),(31,50),(30,50),(30,45),(31,45),(31,43),(32,43),(32,42),(35,42),(35,41),(39,41) ROI_21 0 0 +Polygon (73,44),(77,44),(77,43),(82,43),(82,46),(83,46),(83,47),(82,47),(82,49),(78,49),(78,50),(76,50),(76,51),(75,51),(75,52),(74,52),(74,53),(73,53),(73,54),(68,54),(68,53),(67,53),(67,52),(66,52),(66,45),(67,45),(67,44),(68,44),(68,43),(73,43) ROI_22 0 0 +Polygon (22,45),(23,45),(23,47),(24,47),(24,52),(23,52),(23,53),(22,53),(22,54),(16,54),(16,53),(15,53),(15,51),(14,51),(14,50),(15,50),(15,46),(16,46),(16,44),(22,44) ROI_23 0 0 +Polygon (5,47),(6,47),(6,48),(8,48),(8,49),(9,49),(9,51),(10,51),(10,55),(11,55),(11,58),(10,58),(10,61),(9,61),(9,62),(8,62),(8,63),(6,63),(6,64),(4,64),(4,65),(2,65),(2,64),(1,64),(1,63),(0,63),(0,47),(2,47),(2,46),(5,46) ROI_24 0 0 +Polygon (126,49),(129,49),(129,50),(130,50),(130,53),(131,53),(131,54),(130,54),(130,57),(129,57),(129,58),(128,58),(128,59),(126,59),(126,60),(124,60),(124,59),(122,59),(122,58),(121,58),(121,56),(120,56),(120,53),(121,53),(121,52),(122,52),(122,50),(123,50),(123,49),(125,49),(125,48),(126,48) ROI_25 0 0 +Polygon (95,51),(98,51),(98,50),(104,50),(104,51),(106,51),(106,52),(107,52),(107,56),(108,56),(108,58),(107,58),(107,61),(106,61),(106,63),(105,63),(105,64),(104,64),(104,65),(101,65),(101,64),(99,64),(99,63),(98,63),(98,62),(97,62),(97,61),(95,61),(95,60),(94,60),(94,61),(92,61),(92,60),(90,60),(90,59),(89,59),(89,58),(88,58),(88,57),(89,57),(89,52),(90,52),(90,51),(91,51),(91,50),(95,50) ROI_26 0 0 +Polygon (144,65),(140,65),(140,64),(139,64),(139,63),(138,63),(138,58),(139,58),(139,56),(140,56),(140,55),(142,55),(142,54),(144,54) ROI_27 0 0 +Polygon (60,59),(62,59),(62,60),(64,60),(64,62),(65,62),(65,66),(64,66),(64,67),(63,67),(63,68),(61,68),(61,69),(55,69),(55,68),(54,68),(54,67),(53,67),(53,66),(52,66),(52,60),(53,60),(53,59),(55,59),(55,58),(60,58) ROI_28 0 0 +Polygon (23,62),(26,62),(26,64),(27,64),(27,67),(28,67),(28,70),(27,70),(27,74),(26,74),(26,75),(25,75),(25,76),(24,76),(24,77),(23,77),(23,78),(19,78),(19,76),(17,76),(17,75),(16,75),(16,74),(15,74),(15,73),(14,73),(14,68),(15,68),(15,66),(16,66),(16,64),(17,64),(17,63),(18,63),(18,62),(21,62),(21,61),(23,61) ROI_29 0 0 +Polygon (77,63),(78,63),(78,66),(79,66),(79,67),(78,67),(78,68),(79,68),(79,70),(78,70),(78,73),(77,73),(77,74),(76,74),(76,75),(75,75),(75,76),(74,76),(74,78),(73,78),(73,82),(72,82),(72,83),(71,83),(71,84),(70,84),(70,85),(66,85),(66,84),(64,84),(64,77),(65,77),(65,76),(66,76),(66,75),(68,75),(68,74),(69,74),(69,66),(70,66),(70,64),(72,64),(72,63),(73,63),(73,62),(77,62) ROI_30 0 0 +Polygon (48,66),(47,66),(47,65),(46,65),(46,64),(47,64),(47,63),(48,63) ROI_31 0 0 +Polygon (37,66),(38,66),(38,67),(39,67),(39,69),(40,69),(40,71),(39,71),(39,73),(38,73),(38,74),(36,74),(36,75),(34,75),(34,74),(33,74),(33,73),(32,73),(32,66),(34,66),(34,65),(37,65) ROI_32 0 0 +Polygon (92,66),(94,66),(94,70),(95,70),(95,72),(96,72),(96,73),(99,73),(99,74),(100,74),(100,75),(101,75),(101,82),(100,82),(100,83),(99,83),(99,84),(96,84),(96,85),(93,85),(93,84),(91,84),(91,82),(90,82),(90,79),(89,79),(89,77),(88,77),(88,75),(87,75),(87,74),(86,74),(86,72),(85,72),(85,68),(86,68),(86,66),(87,66),(87,65),(92,65) ROI_33 0 0 +Polygon (129,66),(130,66),(130,67),(132,67),(132,68),(133,68),(133,69),(134,69),(134,76),(133,76),(133,77),(132,77),(132,78),(131,78),(131,79),(129,79),(129,80),(126,80),(126,79),(121,79),(121,78),(120,78),(120,77),(119,77),(119,74),(118,74),(118,72),(119,72),(119,69),(120,69),(120,67),(121,67),(121,66),(122,66),(122,65),(129,65) ROI_34 0 0 +Polygon (144,72),(142,72),(142,73),(141,73),(141,70),(144,70) ROI_35 0 0 +Polygon (5,74),(7,74),(7,75),(8,75),(8,76),(9,76),(9,81),(8,81),(8,83),(7,83),(7,84),(6,84),(6,85),(1,85),(1,83),(0,83),(0,76),(1,76),(1,75),(2,75),(2,74),(4,74),(4,73),(5,73) ROI_36 0 0 +Polygon (40,79),(41,79),(41,80),(42,80),(42,86),(41,86),(41,88),(39,88),(39,89),(36,89),(36,88),(35,88),(35,87),(34,87),(34,85),(33,85),(33,83),(34,83),(34,80),(35,80),(35,79),(37,79),(37,78),(40,78) ROI_37 0 0 +Polygon (55,79),(56,79),(56,80),(57,80),(57,88),(56,88),(56,97),(55,97),(55,101),(54,101),(54,103),(53,103),(53,104),(52,104),(52,105),(49,105),(49,106),(46,106),(46,105),(44,105),(44,103),(43,103),(43,101),(42,101),(42,99),(43,99),(43,96),(44,96),(44,94),(45,94),(45,92),(46,92),(46,90),(47,90),(47,87),(46,87),(46,85),(47,85),(47,81),(48,81),(48,79),(50,79),(50,78),(55,78) ROI_38 0 0 +Polygon (144,91),(142,91),(142,92),(141,92),(141,93),(140,93),(140,94),(138,94),(138,95),(134,95),(134,94),(133,94),(133,93),(132,93),(132,92),(131,92),(131,88),(132,88),(132,87),(133,87),(133,85),(134,85),(134,84),(136,84),(136,83),(137,83),(137,81),(138,81),(138,80),(139,80),(139,79),(140,79),(140,78),(144,78) ROI_39 0 0 +Polygon (109,86),(110,86),(110,90),(109,90),(109,92),(108,92),(108,93),(106,93),(106,94),(105,94),(105,93),(104,93),(104,92),(103,92),(103,91),(102,91),(102,89),(103,89),(103,86),(104,86),(104,85),(109,85) ROI_40 0 0 +Polygon (81,87),(83,87),(83,95),(82,95),(82,96),(81,96),(81,97),(79,97),(79,98),(77,98),(77,99),(72,99),(72,98),(71,98),(71,91),(72,91),(72,90),(73,90),(73,89),(74,89),(74,88),(75,88),(75,87),(79,87),(79,86),(81,86) ROI_41 0 0 +Polygon (13,90),(14,90),(14,92),(15,92),(15,99),(14,99),(14,100),(13,100),(13,101),(12,101),(12,102),(10,102),(10,103),(8,103),(8,102),(5,102),(5,101),(4,101),(4,100),(3,100),(3,96),(4,96),(4,93),(5,93),(5,92),(6,92),(6,90),(8,90),(8,89),(13,89) ROI_42 0 0 +Polygon (122,90),(124,90),(124,91),(125,91),(125,96),(124,96),(124,99),(122,99),(122,100),(120,100),(120,99),(117,99),(117,98),(116,98),(116,92),(117,92),(117,91),(118,91),(118,90),(120,90),(120,89),(122,89) ROI_43 0 0 +Polygon (28,92),(29,92),(29,94),(30,94),(30,99),(31,99),(31,100),(30,100),(30,102),(29,102),(29,103),(28,103),(28,104),(26,104),(26,105),(25,105),(25,104),(22,104),(22,103),(21,103),(21,101),(20,101),(20,93),(21,93),(21,92),(23,92),(23,91),(28,91) ROI_44 0 0 +Polygon (105,96),(106,96),(106,97),(107,97),(107,99),(108,99),(108,103),(109,103),(109,107),(108,107),(108,109),(107,109),(107,110),(106,110),(106,111),(96,111),(96,110),(95,110),(95,109),(94,109),(94,100),(95,100),(95,97),(96,97),(96,96),(97,96),(97,95),(105,95) ROI_45 0 0 +Polygon (134,99),(135,99),(135,100),(136,100),(136,101),(137,101),(137,108),(136,108),(136,109),(135,109),(135,110),(133,110),(133,111),(128,111),(128,110),(127,110),(127,109),(126,109),(126,108),(125,108),(125,103),(126,103),(126,102),(127,102),(127,101),(128,101),(128,100),(130,100),(130,99),(132,99),(132,98),(134,98) ROI_46 0 0 +Polygon (77,106),(79,106),(79,107),(80,107),(80,108),(81,108),(81,115),(80,115),(80,117),(79,117),(79,118),(78,118),(78,119),(75,119),(75,120),(73,120),(73,119),(69,119),(69,118),(68,118),(68,116),(67,116),(67,114),(66,114),(66,109),(67,109),(67,107),(68,107),(68,106),(70,106),(70,105),(77,105) ROI_47 0 0 +Polygon (144,118),(142,118),(142,117),(141,117),(141,112),(142,112),(142,110),(143,110),(143,109),(144,109) ROI_48 0 0 +Polygon (119,113),(120,113),(120,115),(119,115),(119,118),(118,118),(118,119),(117,119),(117,120),(114,120),(114,119),(113,119),(113,113),(114,113),(114,112),(115,112),(115,111),(119,111) ROI_49 0 0 +Polygon (15,114),(16,114),(16,115),(17,115),(17,117),(18,117),(18,119),(19,119),(19,123),(21,123),(21,129),(20,129),(20,130),(19,130),(19,131),(17,131),(17,132),(15,132),(15,131),(13,131),(13,129),(12,129),(12,126),(11,126),(11,125),(10,125),(10,114),(11,114),(11,113),(15,113) ROI_50 0 0 +Polygon (58,114),(60,114),(60,115),(61,115),(61,116),(62,116),(62,117),(64,117),(64,119),(65,119),(65,121),(66,121),(66,126),(65,126),(65,127),(64,127),(64,128),(63,128),(63,129),(62,129),(62,130),(58,130),(58,129),(56,129),(56,128),(55,128),(55,127),(54,127),(54,126),(53,126),(53,125),(52,125),(52,123),(51,123),(51,121),(50,121),(50,117),(51,117),(51,115),(53,115),(53,114),(55,114),(55,113),(58,113) ROI_51 0 0 +Polygon (37,116),(38,116),(38,117),(39,117),(39,118),(40,118),(40,119),(41,119),(41,123),(42,123),(42,126),(41,126),(41,129),(40,129),(40,131),(38,131),(38,132),(34,132),(34,131),(32,131),(32,129),(31,129),(31,128),(30,128),(30,126),(29,126),(29,118),(30,118),(30,117),(31,117),(31,116),(33,116),(33,115),(37,115) ROI_52 0 0 +Polygon (2,122),(3,122),(3,123),(4,123),(4,124),(5,124),(5,127),(6,127),(6,131),(5,131),(5,133),(4,133),(4,134),(2,134),(2,135),(0,135),(0,121),(2,121) ROI_53 0 0 +Polygon (136,123),(137,123),(137,125),(138,125),(138,126),(139,126),(139,133),(138,133),(138,135),(136,135),(136,136),(129,136),(129,135),(127,135),(127,134),(126,134),(126,133),(125,133),(125,132),(124,132),(124,127),(125,127),(125,125),(126,125),(126,124),(127,124),(127,123),(129,123),(129,122),(136,122) ROI_54 0 0 +Polygon (99,124),(108,124),(108,125),(110,125),(110,126),(111,126),(111,127),(113,127),(113,133),(112,133),(112,135),(111,135),(111,136),(110,136),(110,137),(107,137),(107,138),(99,138),(99,137),(94,137),(94,136),(93,136),(93,134),(92,134),(92,132),(91,132),(91,126),(92,126),(92,125),(93,125),(93,124),(94,124),(94,123),(99,123) ROI_55 0 0 +Polygon (80,128),(81,128),(81,129),(82,129),(82,131),(83,131),(83,133),(82,133),(82,136),(81,136),(81,138),(80,138),(80,139),(77,139),(77,138),(75,138),(75,136),(74,136),(74,134),(73,134),(73,133),(74,133),(74,131),(73,131),(73,130),(74,130),(74,128),(75,128),(75,127),(80,127) ROI_56 0 0 +Polygon (27,132),(29,132),(29,133),(30,133),(30,139),(29,139),(29,141),(28,141),(28,142),(24,142),(24,141),(23,141),(23,139),(22,139),(22,135),(23,135),(23,133),(24,133),(24,132),(25,132),(25,131),(27,131) ROI_57 0 0 +Polygon (44,138),(43,138),(43,137),(44,137) ROI_58 0 0 +Polygon (75,142),(78,142),(78,144),(66,144),(66,143),(67,143),(67,142),(69,142),(69,141),(75,141) ROI_59 0 0 +Polygon (104,142),(105,142),(105,143),(106,143),(106,144),(96,144),(96,142),(98,142),(98,141),(104,141) ROI_60 0 0 +Polygon (133,142),(135,142),(135,143),(136,143),(136,144),(128,144),(128,143),(129,143),(129,142),(131,142),(131,141),(133,141) ROI_61 0 0 +Polygon (43,143),(44,143),(44,142),(45,142),(45,143),(47,143),(47,144),(37,144),(37,143),(39,143),(39,142),(43,142) ROI_62 0 0