comparison imagej2_adjust_threshold_binary_jython_script.py @ 2:0a0d2dfd17e0 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5

1:e9243cad1d67

image_processor_copy = input_image_plus_copy.getProcessor()

# Convert image to binary if necessary.
if not image_processor_copy.isBinary():
    # Convert the image to binary grayscale.
    IJ.run(input_image_plus_copy, "Make Binary", "iterations=1 count=1 edm=Overwrite do=Nothing")
# Set the options.
if black_background:
    method_str = "%s dark" % method
else:
    method_str = method

2:0a0d2dfd17e0

image_processor_copy = input_image_plus_copy.getProcessor()

# Convert image to binary if necessary.
if not image_processor_copy.isBinary():
    # Convert the image to binary grayscale.
    IJ.run(
        input_image_plus_copy,
        "Make Binary",
        "iterations=1 count=1 edm=Overwrite do=Nothing",
    )
# Set the options.
if black_background:
    method_str = "%s dark" % method
else:
    method_str = method