Mercurial > repos > imgteam > imagej2_bunwarpj_align

diff imagej2_adjust_threshold_binary_jython_script.py @ 2:0a0d2dfd17e0 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author imgteam
date Sun, 05 Nov 2023 10:51:33 +0000
parents e9243cad1d67
children
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line diff
--- a/imagej2_adjust_threshold_binary_jython_script.py	Mon Sep 28 16:40:20 2020 +0000
+++ b/imagej2_adjust_threshold_binary_jython_script.py	Sun Nov 05 10:51:33 2023 +0000
@@ -26,7 +26,11 @@
 # Convert image to binary if necessary.
 if not image_processor_copy.isBinary():
     # Convert the image to binary grayscale.
-    IJ.run(input_image_plus_copy, "Make Binary", "iterations=1 count=1 edm=Overwrite do=Nothing")
+    IJ.run(
+        input_image_plus_copy,
+        "Make Binary",
+        "iterations=1 count=1 edm=Overwrite do=Nothing",
+    )
 # Set the options.
 if black_background:
     method_str = "%s dark" % method