Mercurial > repos > imgteam > imagej2_bunwarpj_compare_elastic
diff imagej2_skeletonize3d_jython_script.py @ 2:42ba21dc9ea6 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | imgteam |
---|---|
date | Sun, 05 Nov 2023 10:55:35 +0000 |
parents | 125641435c4b |
children |
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--- a/imagej2_skeletonize3d_jython_script.py Mon Sep 28 16:44:00 2020 +0000 +++ b/imagej2_skeletonize3d_jython_script.py Sun Nov 05 10:55:35 2023 +0000 @@ -6,7 +6,7 @@ # provide support for argparse. error_log = sys.argv[-5] input_file = sys.argv[-4] -black_background = sys.argv[-3] == 'yes' +black_background = sys.argv[-3] == "yes" tmp_output_path = sys.argv[-2] output_datatype = sys.argv[-1] @@ -18,9 +18,9 @@ image_processor_copy = input_image_plus_copy.getProcessor() # Set binary options. -options = ['edm=Overwrite', 'iterations=1', 'count=1'] -if (black_background): - options.append('black') +options = ["edm=Overwrite", "iterations=1", "count=1"] +if black_background: + options.append("black") options = " ".join(options) IJ.run(input_image_plus_copy, "Options...", options)