comparison imagej2_create_image_jython_script.py @ 0:1bf7e70e67f9 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author imgteam
date Tue, 17 Sep 2019 16:56:02 -0400
parents
children 8d357579e407
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equal deleted inserted replaced
-1:000000000000 0:1bf7e70e67f9
1 import sys
2 from ij import IJ
3
4 # Fiji Jython interpreter implements Python 2.5 which does not
5 # provide support for argparse.
6 title = sys.argv[ -6 ]
7 width = int( sys.argv[ -5 ] )
8 height = int( sys.argv[ -4 ] )
9 depth = int( sys.argv[ -3 ] )
10 type = sys.argv[ -2 ].replace( '_', ' ' )
11 tmp_image_path = sys.argv[ -1 ]
12
13 imp = IJ.newImage( title, type, width, height, depth )
14 IJ.save( imp, "%s" % tmp_image_path )