Mercurial > repos > imgteam > imagej2_bunwarpj_convert_to_raw
diff imagej2_enhance_contrast_jython_script.py @ 2:0cdd96322600 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 57a0433defa3cbc37ab34fbb0ebcfaeb680db8d5
author | imgteam |
---|---|
date | Sun, 05 Nov 2023 11:00:42 +0000 |
parents | 7f9840d3b7e7 |
children | bd2aadf0f589 |
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--- a/imagej2_enhance_contrast_jython_script.py Mon Sep 28 16:48:49 2020 +0000 +++ b/imagej2_enhance_contrast_jython_script.py Sun Nov 05 11:00:42 2023 +0000 @@ -24,16 +24,16 @@ options = [] # If equalize_histogram, saturated_pixels and normalize are ignored. if equalize_histogram: - options.append('equalize') + options.append("equalize") else: - if saturated_pixels not in [None, 'None']: + if saturated_pixels not in [None, "None"]: # Fiji allows only a single decimal place for this value. - options.append('saturated=%.3f' % float(saturated_pixels)) + options.append("saturated=%.3f" % float(saturated_pixels)) # Normalization of RGB images is not supported. if bit_depth != 24 and normalize: - options.append('normalize') + options.append("normalize") # Run the command. -options = "%s" % ' '.join(options) +options = "%s" % " ".join(options) IJ.run(input_image_plus_copy, "Enhance Contrast...", options) # Save the ImagePlus object as a new image. IJ.saveAs(input_image_plus_copy, output_datatype, tmp_output_path)