Mercurial > repos > imgteam > imagej2_bunwarpj_convert_to_raw
view imagej2_bunwarpj_convert_to_raw.xml @ 0:95fb6fa70c2f draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b08f0e6d1546caaf627b21f8c94044285d5d5b9c-dirty"
author | imgteam |
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date | Tue, 17 Sep 2019 17:06:56 -0400 |
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children | 7f9840d3b7e7 |
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<?xml version='1.0' encoding='UTF-8'?> <tool id="imagej2_bunwarpj_convert_to_raw" name="Convert elastic transformation to raw" version="@WRAPPER_VERSION@.0"> <description>with bUnwarpJ</description> <macros> <import>imagej2_macros.xml</import> </macros> <expand macro="fiji_requirements" /> <command> <![CDATA[ python $__tool_directory__/imagej2_bunwarpj_convert_to_raw.py --target_image "$target_image" --target_image_format $target_image.ext --source_image "$source_image" --source_image_format $source_image.ext --elastic_transformation "$elastic_transformation" --raw_transformation "$raw_transformation" ]]> </command> <inputs> <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="target_image" type="data" label="Target image"/> <param format="bmp,eps,gif,jpg,pcx,pgm,png,psd,tiff" name="source_image" type="data" label="Source image"/> <!-- Support for a bUnwarpJ elastic transformation datatype should be added to Galaxy --> <param format="txt" name="elastic_transformation" type="data" label="Elastic transformation" help="As saved by bUnwarpJ in elastic format"/> </inputs> <outputs> <!-- Support for a bUnwarpJ raw transformation datatype should be added to Galaxy --> <data name="raw_transformation" format="txt" label="${tool.name} on ${on_string}: Raw transformation" /> </outputs> <tests> <test> <param name="target_image" value="dotblot.jpg" /> <param name="source_image" value="blobs.gif" /> <param name="elastic_transformation" value="source_elastic_transformation.txt" ftype="txt" /> <output name="raw_transformation" file="source_raw_transformation.txt" ftype="txt" /> </test> </tests> <help> **What it does** <![CDATA[ Converts an elastic (i.e., B-spline ) transformation file into a raw transformation file. The elastic transformation file must be in the same format as the files created with the **Save Transformation** option in the **Align two images with bUnwarpJ** tool. ]]> </help> <expand macro="bunwarpj_citations" /> </tool>