diff imagej2_bunwarpj_raw_transform.xml @ 3:69e951528a0b draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56

--- a/imagej2_bunwarpj_raw_transform.xml	Sun Nov 05 10:50:30 2023 +0000
+++ b/imagej2_bunwarpj_raw_transform.xml	Wed Sep 25 16:04:07 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="imagej2_bunwarpj_raw_transform" name="Apply raw transformation" version="@WRAPPER_VERSION@.2">
+<tool id="imagej2_bunwarpj_raw_transform" name="Apply raw transformation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
     <description>with ImageJ2</description>
     <macros>
         <import>imagej2_macros.xml</import>
@@ -18,10 +18,10 @@
 
 ## ImageJ2 requires file extensions to be valid image data types.
 #set source_sans_ext = $os.path.splitext($os.path.basename($source_image.file_name))[0]
-#set source_with_ext = '.'.join([source_sans_ext, $source_image.ext])
+#set source_with_ext = './' + '.'.join([source_sans_ext, $source_image.ext])
 ln -s '$source_image.file_name' '$source_with_ext' &&
 #set target_sans_ext = $os.path.splitext($os.path.basename($target_image.file_name))[0]
-#set target_with_ext = '.'.join([target_sans_ext, $target_image.ext])
+#set target_with_ext = './' + '.'.join([target_sans_ext, $target_image.ext])
 ln -s '$target_image.file_name' '$target_with_ext' &&
 
 bunwarpj -raw_transform
@@ -29,10 +29,6 @@
 '$source_with_ext'
 '$raw_transformation'
 '$source_out'
-&>'$error_log';
-if [[ $? -ne 0 ]]; then
-    cat '$error_log' >&2;
-fi
 ]]></command>
     <inputs>
         <expand macro="param_target_image"/>
@@ -57,7 +53,7 @@
             <expand macro="test_target_source_images"/>
             <param name="raw_transformation" value="source_raw_transformation.txt"/>
             <param name="source_out_datatype" value="png"/>
-            <output name="source_out" file="raw_trans_registered_source1.png" compare="sim_size"/>
+            <output name="source_out" file="raw_trans_registered_source1.png" compare="image_diff"/>
         </test>
     </tests>
     <help>