3.0fijigrep
--iterations $iterations
--count $count
--black_background $black_background
--pad_edges_when_eroding $pad_edges_when_eroding
.. class:: warningmark
This tool works on binary images, so other image types will automatically be converted to binary
before they are analyzed. This step is performed using the ImageJ2 **Make Binary** command with
the following settings: **Iterations:** 1, **Count:** 1, **Pad edges when eroding:** No. The tool
allows you to choose the **Black background** setting. If these settings are not appropriate,
first manually convert the image to binary using the **Convert to binary (black and white)**
tool, which allows you to change them.
@InProceedings(Arganda-Carreras2006,
author = "Ignacio Arganda-Carreras and
Carlos Oscar S{\'a}nchez Sorzano and
Roberto Marabini and
Jos{\'e} Mar\'{\i}a Carazo and
Carlos Ortiz-de-Solorzano and
Jan Kybic",
title = "Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization",
publisher = "Springer Berlin / Heidelberg",
booktitle = "Computer Vision Approaches to Medical Image Analysis",
series = "Lecture Notes in Computer Science",
year = "2006",
volume = "4241",
pages = "85-95",
month = "May",
city = "Graz, Austria")
10.1038/nmeth.201910.1038/nmeth.2102