# HG changeset patch
# User imgteam
# Date 1765970707 0
# Node ID e26894daf0a01cd3036a5cc9098e00d44fb33887
# Parent  0c76d029dbe3f2cc20501ac4bd480a3032e84c83
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/mahotas-features/ commit 8e99ddb62ceab1da15996906a0813826b62d38fe

diff -r 0c76d029dbe3 -r e26894daf0a0 mahotas_features.xml
--- a/mahotas_features.xml	Fri Nov 10 14:23:28 2023 +0000
+++ b/mahotas_features.xml	Wed Dec 17 11:25:07 2025 +0000
@@ -11,23 +11,25 @@
         <requirement type="package" version="4.0.0">pillow</requirement>
         <requirement type="package" version="1.12">numpy</requirement>
         <requirement type="package" version="0.15.1">tifffile</requirement>
-    </requirements> 
-    <command detect_errors="aggressive"><![CDATA[mahotas-features.py
-#set files = '" "'.join( [ str( $file ) for $file in $inputs ] )
-"${files}"
+    </requirements>
+    <command detect_errors="aggressive"><![CDATA[
+        /usr/local/bin/mahotas-features.py
+        #set files = '" "'.join( [ str( $file ) for $file in $inputs ] )
+        "${files}"
 
---output $output
---convert-to-bw $convertbw
-$haralick 
-$lbp 
---clobber
-#if $lbpradius and $lbpradius is not None:
---lbp-radius $lbpradius
-#end if
+        --output $output
+        --convert-to-bw $convertbw
+        $haralick 
+        $lbp 
+        --clobber
+        #if $lbpradius and $lbpradius is not None:
+        --lbp-radius $lbpradius
+        #end if
 
-#if $lbppoints and $lbppoints is not None:
---lbp-points $lbppoints
-#end if]]></command>
+        #if $lbppoints and $lbppoints is not None:
+        --lbp-points $lbppoints
+        #end if]]>
+    </command>
     <inputs>
         <param name="inputs" type="data" format="tiff,png,jpg,bmp" multiple="True" label="Image files"/>
         <param name="convertbw" type="select" label="Convert color images to greyscale">
@@ -46,9 +48,9 @@
     <tests>
         <test>
             <param name="inputs" value="galaxyIcon_noText.png"/>
-            <param name="haralick" value="--haralick" />
-            <param name="lbp" value="--lbp" />
-            <param name="convertbw" value="max" />
+            <param name="haralick" value="true"/>
+            <param name="lbp" value="true"/>
+            <param name="convertbw" value="max"/>
             <output name="output" file="features.tsv" ftype="tsv" lines_diff="2"/>
         </test>
     </tests>