Mercurial > repos > imgteam > mergeneighboursinlabelimage
annotate mergeneighboursinlabelimage.xml @ 0:07ac39c0e949 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:38:38 -0500 |
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children | c6a6ab7c9940 |
rev | line source |
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07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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1 <tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2"> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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2 <description>Merge Neighbours in Label Image</description> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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3 <requirements> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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4 <requirement type="package" version="0.14.2">scikit-image</requirement> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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5 <requirement type="package" version="1.15.4">numpy</requirement> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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6 </requirements> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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7 <command> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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8 <![CDATA[ |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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9 python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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10 ]]> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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11 </command> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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12 <inputs> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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13 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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14 <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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15 </inputs> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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16 <outputs> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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17 <data format="tiff" name="output" from_work_dir="tmp.tiff"/> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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18 </outputs> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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19 <tests> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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20 <test> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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21 <param name="input" value="galaxyIcon_noText.tif"/> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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22 <param name="c" value="10"/> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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23 <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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24 </test> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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25 </tests> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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26 <help> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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27 **What it does** |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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28 |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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29 This tools merges nearby objects in a label image using the minimum pixel distance. |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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30 </help> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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31 <citations> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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32 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
parents:
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33 </citations> |
07ac39c0e949
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
imgteam
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34 </tool> |