Mercurial > repos > imgteam > mergeneighboursinlabelimage
comparison mergeneighboursinlabelimage.xml @ 1:c6a6ab7c9940 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit b2acc1845a25828181597fe5b6982fe116a7796d
author | imgteam |
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date | Mon, 22 Jul 2019 05:03:33 -0400 |
parents | 07ac39c0e949 |
children | 9cbddb13fb9e |
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0:07ac39c0e949 | 1:c6a6ab7c9940 |
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1 <tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2"> | 1 <tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.3"> |
2 <description>Merge Neighbours in Label Image</description> | 2 <description>Merge Neighbours in Label Image</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.14.2">scikit-image</requirement> | 4 <requirement type="package" version="0.14.2">scikit-image</requirement> |
5 <requirement type="package" version="1.15.4">numpy</requirement> | 5 <requirement type="package" version="1.15.4">numpy</requirement> |
6 <requirement type="package" version="0.15.1">tifffile</requirement> | |
6 </requirements> | 7 </requirements> |
7 <command> | 8 <command detect_errors="aggressive"> |
8 <![CDATA[ | 9 <![CDATA[ |
9 python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c | 10 python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c |
10 ]]> | 11 ]]> |
11 </command> | 12 </command> |
12 <inputs> | 13 <inputs> |
19 <tests> | 20 <tests> |
20 <test> | 21 <test> |
21 <param name="input" value="galaxyIcon_noText.tif"/> | 22 <param name="input" value="galaxyIcon_noText.tif"/> |
22 <param name="c" value="10"/> | 23 <param name="c" value="10"/> |
23 <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> | 24 <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> |
24 </test> | 25 </test> |
25 </tests> | 26 </tests> |
26 <help> | 27 <help> |
27 **What it does** | 28 **What it does** |
28 | 29 |
29 This tools merges nearby objects in a label image using the minimum pixel distance. | 30 This tools merges nearby objects in a label image using the minimum pixel distance. |