Mercurial > repos > imgteam > mergeneighboursinlabelimage
diff mergeneighboursinlabelimage.xml @ 0:07ac39c0e949 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:38:38 -0500 |
parents | |
children | c6a6ab7c9940 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mergeneighboursinlabelimage.xml Sat Feb 09 14:38:38 2019 -0500 @@ -0,0 +1,34 @@ +<tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2"> + <description>Merge Neighbours in Label Image</description> + <requirements> + <requirement type="package" version="0.14.2">scikit-image</requirement> + <requirement type="package" version="1.15.4">numpy</requirement> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c + ]]> + </command> + <inputs> + <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/> + <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/> + </inputs> + <outputs> + <data format="tiff" name="output" from_work_dir="tmp.tiff"/> + </outputs> + <tests> + <test> + <param name="input" value="galaxyIcon_noText.tif"/> + <param name="c" value="10"/> + <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> + </test> + </tests> + <help> + **What it does** + + This tools merges nearby objects in a label image using the minimum pixel distance. + </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool>