Mercurial > repos > imgteam > mergeneighboursinlabelimage
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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/\mergeneighboursinlabelimage commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:11:27 +0000 |
parents | c6a6ab7c9940 |
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<tool id="ip_merge_neighbours_in_label" name="Merge neighbors in label map" version="0.3-2"> <description></description> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c ]]> </command> <inputs> <param name="input" type="data" format="tiff,png,jpg,bmp" label="Label Image File"/> <param label="Distance in pixel of objects which are merged" name="c" type="integer" value="50"/> </inputs> <outputs> <data format="tiff" name="output" from_work_dir="tmp.tiff"/> </outputs> <tests> <test> <param name="input" value="galaxyIcon_noText.tif"/> <param name="c" value="10"/> <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> </test> </tests> <help> **What it does** This tools merges nearby objects in a label image using the minimum pixel distance. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>