Mercurial > repos > imgteam > mergeneighboursinlabelimage
changeset 1:c6a6ab7c9940 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/\mergeneighboursinlabelimage commit b2acc1845a25828181597fe5b6982fe116a7796d
| author | imgteam |
|---|---|
| date | Mon, 22 Jul 2019 05:03:33 -0400 |
| parents | 07ac39c0e949 |
| children | 9cbddb13fb9e |
| files | mergeneighboursinlabelimage.py mergeneighboursinlabelimage.xml |
| diffstat | 2 files changed, 5 insertions(+), 4 deletions(-) [+] |
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--- a/mergeneighboursinlabelimage.py Sat Feb 09 14:38:38 2019 -0500 +++ b/mergeneighboursinlabelimage.py Mon Jul 22 05:03:33 2019 -0400 @@ -5,7 +5,7 @@ from skimage.measure import regionprops import scipy.spatial.distance import numpy as np -import warnings +import warnings def merge_n(img, dist=50): props = regionprops(img)
--- a/mergeneighboursinlabelimage.xml Sat Feb 09 14:38:38 2019 -0500 +++ b/mergeneighboursinlabelimage.xml Mon Jul 22 05:03:33 2019 -0400 @@ -1,10 +1,11 @@ -<tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.2"> +<tool id="ip_merge_neighbours_in_label" name="Merge Neighbours in Label" version="0.3"> <description>Merge Neighbours in Label Image</description> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> + <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> - <command> + <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/mergeneighboursinlabelimage.py' '$input' ./tmp.tiff -c $c ]]> @@ -21,7 +22,7 @@ <param name="input" value="galaxyIcon_noText.tif"/> <param name="c" value="10"/> <output name="output" file="out.tiff" ftype="tiff" compare="sim_size"/> - </test> + </test> </tests> <help> **What it does**