comparison morphological_operations.py @ 2:4e25befab102 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/morphological_operations commit c86a1b93cb7732f7331a981d13465653cc1a2790

1:ad795d260ba8

import argparse

import numpy as np
import scipy.ndimage as ndi
import skimage.io
import skimage.morphology as morph

    parser.add_argument('--selem-size', type=int)
    parser.add_argument('input', type=str)
    parser.add_argument('output', type=str)
    args = parser.parse_args()

    im = skimage.io.imread(args.input)
    assert im.ndim in (2, 3), 'Input image must be two-dimensional and either single-channel or multi-channel.'

    if im.ndim == 2:
        im_result = apply_operation(args, im)

2:4e25befab102

import argparse

import giatools.io
import numpy as np
import scipy.ndimage as ndi
import skimage.io
import skimage.morphology as morph

    parser.add_argument('--selem-size', type=int)
    parser.add_argument('input', type=str)
    parser.add_argument('output', type=str)
    args = parser.parse_args()

    im = giatools.io.imread(args.input)
    assert im.ndim in (2, 3), 'Input image must be two-dimensional and either single-channel or multi-channel.'

    if im.ndim == 2:
        im_result = apply_operation(args, im)