Mercurial > repos > imgteam > morphological_operations
changeset 2:4e25befab102 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/morphological_operations commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:12:39 +0000 |
| parents | ad795d260ba8 |
| children | |
| files | morphological_operations.py morphological_operations.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/morphological_operations.py Thu Apr 04 15:25:44 2024 +0000 +++ b/morphological_operations.py Wed Apr 24 08:12:39 2024 +0000 @@ -1,5 +1,6 @@ import argparse +import giatools.io import numpy as np import scipy.ndimage as ndi import skimage.io @@ -76,7 +77,7 @@ parser.add_argument('output', type=str) args = parser.parse_args() - im = skimage.io.imread(args.input) + im = giatools.io.imread(args.input) assert im.ndim in (2, 3), 'Input image must be two-dimensional and either single-channel or multi-channel.' if im.ndim == 2:
--- a/morphological_operations.xml Thu Apr 04 15:25:44 2024 +0000 +++ b/morphological_operations.xml Wed Apr 24 08:12:39 2024 +0000 @@ -4,7 +4,7 @@ <import>creators.xml</import> <import>tests.xml</import> <token name="@TOOL_VERSION@">1.12.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <creator> <expand macro="creators/bmcv"/> @@ -18,6 +18,7 @@ <requirements> <requirement type="package" version="@TOOL_VERSION@">scipy</requirement> <requirement type="package" version="0.22.0">scikit-image</requirement> + <requirement type="package" version="0.1">giatools</requirement> </requirements> <command><![CDATA[