comparison overlay_images.xml @ 8:ca362a9bfa20 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/overlay_images/ commit 574caf027453f080a7f86f80eae9775ed1c8afa0

7:8dc02c854048

    <description></description>
    <macros>
        <import>creators.xml</import>
        <import>tests.xml</import>
        <token name="@TOOL_VERSION@">0.0.4</token>
        <token name="@VERSION_SUFFIX@">3</token>
    </macros>
    <creator>
        <expand macro="creators/bmcv"/>
        <expand macro="creators/thawn"/>
    </creator>

    </xrefs>
    <requirements>
        <requirement type="package" version="0.18.1">scikit-image</requirement> 
        <requirement type="package" version="3.3.4">matplotlib</requirement>
        <requirement type="package" version="2020.10.1">tifffile</requirement>
        <requirement type="package" version="1.20.2">numpy</requirement>
        <requirement type="package" version="0.1">giatools</requirement>
    </requirements>
    <command detect_errors="aggressive">
    <![CDATA[
        python '$__tool_directory__/overlay_images.py'

                <param name="im2" type="data" format="tiff,png" label="Image 2" />
                <param name="alpha" type="float" value="0.5" min="0.0" max="1.0" label="The weight for blending: result = (1 - weight) * image1 + weight * image2." />
            </when>
            <when value="seg_contour">
                <param name="im1" type="data" format="tiff,png" label="Intensity image" />
                <param name="im2" type="data" format="tiff,png" label="Label image" />
                <param name="thickness" type="integer" value="2" min="1" label="Contour thickness (in pixels)" />
                <param name="color" type="color" value="#ff0000" label="Contour color"/>
                <param argument="--show_label" type="boolean" checked='false' truevalue="--show_label" falsevalue="" label="Show labels" />
                <param name="label_color" type="color" value="#ffff00" label="Label color"/>
            </when>

8:ca362a9bfa20

    <description></description>
    <macros>
        <import>creators.xml</import>
        <import>tests.xml</import>
        <token name="@TOOL_VERSION@">0.0.4</token>
        <token name="@VERSION_SUFFIX@">4</token>
    </macros>
    <creator>
        <expand macro="creators/bmcv"/>
        <expand macro="creators/thawn"/>
    </creator>

    </xrefs>
    <requirements>
        <requirement type="package" version="0.18.1">scikit-image</requirement> 
        <requirement type="package" version="3.3.4">matplotlib</requirement>
        <requirement type="package" version="2020.10.1">tifffile</requirement>
        <requirement type="package" version="1.21">numpy</requirement>
        <requirement type="package" version="10.4.0">pillow</requirement>
        <requirement type="package" version="0.1">giatools</requirement>
    </requirements>
    <command detect_errors="aggressive">
    <![CDATA[
        python '$__tool_directory__/overlay_images.py'

                <param name="im2" type="data" format="tiff,png" label="Image 2" />
                <param name="alpha" type="float" value="0.5" min="0.0" max="1.0" label="The weight for blending: result = (1 - weight) * image1 + weight * image2." />
            </when>
            <when value="seg_contour">
                <param name="im1" type="data" format="tiff,png" label="Intensity image" />
                <param name="im2" type="data" format="tiff,png" label="Label map" />
                <param name="thickness" type="integer" value="2" min="1" label="Contour thickness (in pixels)" />
                <param name="color" type="color" value="#ff0000" label="Contour color"/>
                <param argument="--show_label" type="boolean" checked='false' truevalue="--show_label" falsevalue="" label="Show labels" />
                <param name="label_color" type="color" value="#ffff00" label="Label color"/>
            </when>