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comparison points2binaryimage.xml @ 1:90385ec28b34 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points2binaryimage/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:11:42 +0000
parents dd513c9f5230
children 2ad6350df85b
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0:dd513c9f5230 1:90385ec28b34
1 <tool id="ip_points_to_binaryimage" name="Points to Binary Image" version="0.1"> 1 <tool id="ip_points_to_binaryimage" name="Convert point coordinates to binary image" version="0.2-1">
2 <description>Converts points to a binary image</description> 2 <description></description>
3 <edam_operations>
4 <edam_operation>operation_3443</edam_operation>
5 </edam_operations>
6 <xrefs>
7 <xref type="bio.tools">galaxy_image_analysis</xref>
8 </xrefs>
3 <requirements> 9 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 10 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement> 11 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package" version="0.23.4">pandas</requirement> 12 <requirement type="package" version="0.23.4">pandas</requirement>
7 <requirement type="package" version="2018.7">pytz</requirement><!--pandas seems to have additional requirements that are not automatically installed--> 13 <requirement type="package" version="2018.7">pytz</requirement><!--pandas seems to have additional requirements that are not automatically installed-->
8 <requirement type="package" version="2.4.1">dateutil</requirement> 14 <requirement type="package" version="2.4.1">dateutil</requirement>
15 <requirement type="package" version="0.15.1">tifffile</requirement>
9 </requirements> 16 </requirements>
10 <command> 17 <command detect_errors="aggressive">
11 <![CDATA[ 18 <![CDATA[
12 python '$__tool_directory__/points2binaryimage.py' '$input' '$output' $shapex $shapey $has_header $invert_xy 19 python '$__tool_directory__/points2binaryimage.py' '$input' '$output' $shapex $shapey $has_header $invert_xy
13 ]]> 20 ]]>
14 </command> 21 </command>
15 <inputs> 22 <inputs>