diff points2label.xml @ 0:dcc8c1d6af48 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2labelimage/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/points2label.xml	Sat Feb 09 14:44:10 2019 -0500
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+<tool id="ip_points_to_labe" name="Points to Label" version="0.2">
+    <description>Points to Label Image</description>
+    <requirements>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="0.23.4">pandas</requirement>
+    </requirements>
+    <command>
+    <![CDATA[
+        python '$__tool_directory__/points2label.py' '$input' '$output' '$org_file' $has_header
+    ]]>
+    </command>
+    <inputs>
+        <param name="input" type="data" format="tabular" label="Point CSV file"/>
+        <param name="org_file" type="data" format="tiff" label="Original label image file"/>
+        <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> 
+    </inputs>
+    <outputs>
+        <data name="output" format="tiff"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="points.tsv"/>
+            <param name="org_file" value="galaxyIcon_noText.tif"/>
+            <output name="output" file="out.tif" ftype="tiff" compare="sim_size"/>
+        </test>
+    </tests>
+    <help>
+    **What it does**
+
+    This tool converts points to a label image.
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 
+    </citations>
+</tool>