Mercurial > repos > imgteam > points_association_nn
diff points_association_nn.xml @ 2:b30aa285ac0a draft
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/points_association_nn/ commit bf6e2870c94ed4ceb8bce4003813fe11724f5ca2"
author | imgteam |
---|---|
date | Sun, 25 Jul 2021 20:10:46 +0000 |
parents | fd4293bee0dc |
children | 65210e69cf95 |
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--- a/points_association_nn.xml Thu Jul 22 22:30:31 2021 +0000 +++ b/points_association_nn.xml Sun Jul 25 20:10:46 2021 +0000 @@ -1,4 +1,4 @@ -<tool id="ip_points_association_nn" name="Association of points" version="0.0.1" profile="20.05"> +<tool id="ip_points_association_nn" name="Association of points" version="0.0.2" profile="20.05"> <description>in consecutive frames (slices) using the nearest neighbor algorithm</description> <requirements> <requirement type="package" version="1.20.2">numpy</requirement> @@ -8,7 +8,7 @@ </requirements> <command> <![CDATA[ - python '$__tool_directory__/points_association_nn.py' + python '$__tool_directory__/points_association_nn.py' '$fn_in' ./output.xlsx '$nbpx' @@ -17,10 +17,10 @@ ]]> </command> <inputs> - <param name="fn_in" type="data" format="tabular" label="Name of input file (tsv tabular)" /> - <param name="nbpx" type="integer" value="6" label="Neighborhood size in pixel" /> - <param name="thres" type="float" value="25" label="Percentage (%) of the global maximal intensity for thresholding some event" /> - <param name="minlen" type="float" value="50" label="Minimum length of tracks (% of sequence length)" /> + <param name="fn_in" type="data" format="tabular" label="Coordinates (and intensities) of input points (tsv tabular)" /> + <param name="nbpx" type="integer" value="6" optional="true" min="1" max="30" label="Neighborhood size (in pixel) for associating points" /> + <param name="thres" type="float" value="25" optional="true" min="0.0" max="99.9" label="Tracks with all intensities lower than certain percentage (%) of the global maximal intensity will be discarded" /> + <param name="minlen" type="float" value="50" optional="true" min="1.0" max="100.0" label="Minimum length of tracks (% of sequence length)" /> </inputs> <outputs> <data format="xlsx" name="fn_out" from_work_dir="output.xlsx" />