comparison projective_transformation.py @ 7:6a8ae8cd7167 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation/ commit c86a1b93cb7732f7331a981d13465653cc1a2790

6:2f504e075496

"""

import argparse
import warnings

import numpy as np
import pandas as pd
import skimage.color
import skimage.io
import tifffile

    return coords


def transform(moving_fn, fixed_fn, warp_mat, output_fn):
    moving = skimage.io.imread(moving_fn)
    nDims = len(moving.shape)
    assert nDims in [2, 3, 4, 5, 6], 'this tool only supports up to 6 dimensions'

    if moving.shape[-1] in [3, 4] and nDims > 2:
        isRGB = True

    if nDims > 3 or (nDims == 3 and not isRGB):
        isMulCh = True
    else:
        isMulCh = False

    fixed = skimage.io.imread(fixed_fn)
    if fixed.shape[-1] in [3, 4] and len(fixed.shape) > 2:
        hw_fixed = fixed.shape[-3:-1]
    else:
        hw_fixed = fixed.shape[-2:]

7:6a8ae8cd7167

"""

import argparse
import warnings

import giatools.io
import numpy as np
import pandas as pd
import skimage.color
import skimage.io
import tifffile

    return coords


def transform(moving_fn, fixed_fn, warp_mat, output_fn):
    moving = giatools.io.imread(moving_fn)
    nDims = len(moving.shape)
    assert nDims in [2, 3, 4, 5, 6], 'this tool only supports up to 6 dimensions'

    if moving.shape[-1] in [3, 4] and nDims > 2:
        isRGB = True

    if nDims > 3 or (nDims == 3 and not isRGB):
        isMulCh = True
    else:
        isMulCh = False

    fixed = giatools.io.imread(fixed_fn)
    if fixed.shape[-1] in [3, 4] and len(fixed.shape) > 2:
        hw_fixed = fixed.shape[-3:-1]
    else:
        hw_fixed = fixed.shape[-2:]