Mercurial > repos > imgteam > projective_transformation
view projective_transformation.xml @ 5:f5744f0e5a81 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:12:05 +0000 |
parents | 37b079c98c38 |
children | 2f504e075496 |
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<tool id="ip_projective_transformation" name="Performs projective transformation with/without labels" version="0.1.2-2" profile="20.05"> <description></description> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> <requirement type="package" version="0.18.1">scikit-image</requirement> <requirement type="package" version="1.2.4">pandas</requirement> <requirement type="package" version="1.20.2">numpy</requirement> <requirement type="package" version="1.6.2">scipy</requirement> <requirement type="package" version="2020.10.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ ln -s '$moving' ./in.${moving.ext} && python '$__tool_directory__/projective_transformation.py' '$fixed' ./in.${moving.ext} '$tmat' ./out.${moving.ext} && mv ./out.${moving.ext} ./result_image ]]> </command> <inputs> <param name="moving" type="data" format="tiff,png" label="Moving image (to be transformed)" /> <param name="fixed" type="data" format="tiff,png" label="Fixed image (the reference)" /> <param name="tmat" type="data" format="tabular" label="Transformation matrix" /> </inputs> <outputs> <data name="warped" format_source="moving" metadata_source="moving" from_work_dir="result_image" /> </outputs> <tests> <test> <param name="fixed" value="fixed.png"/> <param name="moving" value="moving.png"/> <param name="tmat" value="tmat.tsv"/> <output name="warped" value="moving_warped.png" ftype="png" compare="sim_size" delta_frac="0.1" /> </test> <test> <param name="fixed" value="fixed_rgb.png"/> <param name="moving" value="moving_rgb.png"/> <param name="tmat" value="tmat.tsv"/> <output name="warped" value="moving_rgb_warped.png" ftype="png" compare="sim_size" delta_frac="0.1" /> </test> <test> <param name="fixed" value="multi_f.tif"/> <param name="moving" value="multi_m.tif"/> <param name="tmat" value="tmat.tsv"/> <output name="warped" value="multi_m_warped.tif" ftype="tiff" compare="sim_size" delta_frac="0.1" /> </test> </tests> <help> **What it does** This tool performs a projective transformation of the moving 2D image so that it fits the fixed 2D image. Multi-channel and RGB images are supported. </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>