Mercurial > repos > imgteam > projective_transformation
changeset 7:6a8ae8cd7167 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:13:05 +0000 |
| parents | 2f504e075496 |
| children | |
| files | projective_transformation.py projective_transformation.xml |
| diffstat | 2 files changed, 5 insertions(+), 3 deletions(-) [+] |
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--- a/projective_transformation.py Thu Apr 04 15:26:07 2024 +0000 +++ b/projective_transformation.py Wed Apr 24 08:13:05 2024 +0000 @@ -9,6 +9,7 @@ import argparse import warnings +import giatools.io import numpy as np import pandas as pd import skimage.color @@ -47,7 +48,7 @@ def transform(moving_fn, fixed_fn, warp_mat, output_fn): - moving = skimage.io.imread(moving_fn) + moving = giatools.io.imread(moving_fn) nDims = len(moving.shape) assert nDims in [2, 3, 4, 5, 6], 'this tool only supports up to 6 dimensions' @@ -62,7 +63,7 @@ else: isMulCh = False - fixed = skimage.io.imread(fixed_fn) + fixed = giatools.io.imread(fixed_fn) if fixed.shape[-1] in [3, 4] and len(fixed.shape) > 2: hw_fixed = fixed.shape[-3:-1] else:
--- a/projective_transformation.xml Thu Apr 04 15:26:07 2024 +0000 +++ b/projective_transformation.xml Wed Apr 24 08:13:05 2024 +0000 @@ -4,7 +4,7 @@ <import>creators.xml</import> <import>tests.xml</import> <token name="@TOOL_VERSION@">0.1.2</token> - <token name="@VERSION_SUFFIX@">3</token> + <token name="@VERSION_SUFFIX@">4</token> </macros> <creator> <expand macro="creators/bmcv"/> @@ -21,6 +21,7 @@ <requirement type="package" version="1.24.4">numpy</requirement> <requirement type="package" version="1.10.1">scipy</requirement> <requirement type="package" version="2021.7.2">tifffile</requirement> + <requirement type="package" version="0.1">giatools</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[