changeset 7:499ad4d9aa13 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/projective_transformation_points/ commit c045f067a57e8308308cf6329060c7ccd3fc372f

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/creators.xml	Thu Apr 04 15:26:12 2024 +0000
@@ -0,0 +1,23 @@
+<macros>
+
+    <xml name="creators/bmcv">
+        <organization name="Biomedical Computer Vision Group, Heidelberg Universtiy" alternateName="BMCV" url="http://www.bioquant.uni-heidelberg.de/research/groups/biomedical_computer_vision.html" />
+        <yield />
+    </xml>
+
+    <xml name="creators/alliecreason">
+        <person givenName="Allison" familyName="Creason"/>
+        <yield/>
+    </xml>
+
+    <xml name="creators/bugraoezdemir">
+        <person givenName="Bugra" familyName="Oezdemir"/>
+        <yield/>
+    </xml>
+
+    <xml name="creators/thawn">
+        <person givenName="Till" familyName="Korten"/>
+        <yield/>
+    </xml>
+    
+</macros>

--- a/projective_transformation_points.xml	Mon Nov 13 22:12:09 2023 +0000
+++ b/projective_transformation_points.xml	Thu Apr 04 15:26:12 2024 +0000
@@ -1,5 +1,13 @@
-<tool id="ip_projective_transformation_points" name="Performs projective transformation" license="MIT" version="0.1.1-2" profile="20.05">
+<tool id="ip_projective_transformation_points" name="Perform projective transformation of point coordinates" license="MIT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
     <description></description>
+    <macros>
+        <import>creators.xml</import>
+        <token name="@TOOL_VERSION@">0.1.1</token>
+        <token name="@VERSION_SUFFIX@">3</token>
+    </macros>
+    <creator>
+        <expand macro="creators/bmcv"/>
+    </creator>
     <edam_operations>
         <edam_operation>operation_3443</edam_operation>
     </edam_operations>
@@ -22,8 +30,8 @@
     ]]>
     </command>
     <inputs>
-        <param name="input" type="data" format="tabular" label="ROIs (pixel coordinates) to be transformed (TSV file)" />
-        <param name="tmat" type= "data" format="tabular" label="Transformation matrix (TSV file)" />
+        <param name="input" type="data" format="tabular" label="Point coordinates to be transformed" help="Must be a TSV file." />
+        <param name="tmat" type= "data" format="tabular" label="Transformation matrix" help="Homogeneous transformation matrix (3⨉3)." />
     </inputs>
     <outputs>
        <data format="tabular" name="output" />
@@ -36,15 +44,20 @@
       </test>
     </tests>
     <help>
-    **What it does**
 
-    This tool performs a projective transformation of regions of interest (ROIs) defined by pixel (point) coordinates with/without labels.
+        **Performs projective transformation of point coordinates.**
+
+        This tool performs a projective transformation of point coordinates with/without labels.
 
-    About the format of point coordinates (and labels) in the input TSV table: 
-    1st column: x-coordinate; 
-    2nd column: y-coordinate; 
-    (optional) more column(s): point label(s) (numerical or categorical).
-    The top row of the table will be regarded as column headers.
+        The input point coordinates to be transformed must be in the following format:
+        
+        **Column 1:** The horizontal coordinate.
+
+        **Column 2:** The vertical coordinate.
+
+        **Further columns:** Point labels (numerical or categorical, optional).
+
+        The frist row of the table will be regarded as column headers.
 
     </help>
     <citations>