view repeat_channels.xml @ 0:7cdb50fee601 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/repeat_channels/ commit 60cf803236ef94f414056823688e6fd008b7a1b6

<tool id="repeat_channels" name="Convert single-channel to multi-channel image" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
    <description>with NumPy</description>
    <macros>
        <import>creators.xml</import>
        <import>tests.xml</import>
        <token name="@TOOL_VERSION@">1.26.4</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>
    <creator>
        <expand macro="creators/bmcv"/>
    </creator>
    <edam_operations>
        <edam_operation>operation_3443</edam_operation>
    </edam_operations>
    <xrefs>
        <xref type="bio.tools">galaxy_image_analysis</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="1.26.4">numpy</requirement>
        <requirement type="package" version="0.18.1">scikit-image</requirement>
        <requirement type="package" version="0.1">giatools</requirement>
    </requirements>
    <command><![CDATA[
    
    ## Inputs
    
    python '$__tool_directory__/repeat_channels.py'
    '$input'
    '$count'
    
    ## Outputs
    
    ./output.tif
    
    ]]>
    </command>
    <inputs>
        <param name="input" type="data" format="tiff,png" label="Input image (single-channel)" />
        <param name="count" type="integer" value="3" min="1" label="Number of channels" />
    </inputs>
    <outputs>
        <data format="tiff" name="output" from_work_dir="output.tif" />
    </outputs>
    <tests>
        <test>
            <param name="input" value="input1.tif" />
            <param name="count" value="3" />
            <expand macro="tests/intensity_image_diff" name="output" value="input1_c3.tif" ftype="tiff" />
        </test>
    </tests>
    <help>

        **Convert single-channel to multi-channel image.**

        This tools converts a single-channel image to a multi-channel image by repeating the channel multiple times.

    </help>
    <citations>
        <citation type="doi">10.1038/s41586-020-2649-2</citation>
    </citations>
</tool>