Mercurial > repos > imgteam > split_labelmap
comparison split_labelmap.xml @ 0:597b7ef44b05 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/split_labelmaps/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:47:34 -0500 |
parents | |
children | 9db1c22dbe17 |
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1 <tool id="ip_split_labelmap" name="Split Labelmap" version="0.1"> | |
2 <description></description> | |
3 <requirements> | |
4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
5 <requirement type="package" version="1.15.4">numpy</requirement> | |
6 <requirement type="package" version="0.15.1">tifffile</requirement> <!--not sure if this is required--> | |
7 </requirements> | |
8 <command> | |
9 <![CDATA[ | |
10 python '$__tool_directory__/split_labelmap.py' '$input' '$output' | |
11 ]]> | |
12 </command> | |
13 <inputs> | |
14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image containing labels"/> | |
15 </inputs> | |
16 <outputs> | |
17 <data name="output" format="tiff"/> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="input" value="sample_seg.tif"/> | |
22 <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/> | |
23 </test> | |
24 </tests> | |
25 <help> | |
26 **What it does** | |
27 | |
28 Takes a labeled image and outputs a similar file where the labeled parts | |
29 of the image that touch (or overlap) are separated by at least 1 pixel (at most 2). | |
30 </help> | |
31 <citations> | |
32 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
33 </citations> | |
34 </tool> |