Mercurial > repos > imgteam > split_labelmap
comparison split_labelmap.xml @ 2:7a2e2e3cf836 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmaps/ commit c045f067a57e8308308cf6329060c7ccd3fc372f
author | imgteam |
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date | Thu, 04 Apr 2024 15:26:45 +0000 |
parents | 9db1c22dbe17 |
children | 0e7be7c35f15 |
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1:9db1c22dbe17 | 2:7a2e2e3cf836 |
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1 <tool id="ip_split_labelmap" name="Split label map using morphological operators" version="0.2-2"> | 1 <tool id="ip_split_labelmap" name="Split label map using morphological operators" version="0.2-2"> |
2 <description></description> | 2 <description></description> |
3 <macros> | |
4 <import>creators.xml</import> | |
5 <import>tests.xml</import> | |
6 </macros> | |
7 <creator> | |
8 <expand macro="creators/bmcv"/> | |
9 </creator> | |
3 <edam_operations> | 10 <edam_operations> |
4 <edam_operation>operation_3443</edam_operation> | 11 <edam_operation>operation_3443</edam_operation> |
5 </edam_operations> | 12 </edam_operations> |
6 <xrefs> | 13 <xrefs> |
7 <xref type="bio.tools">galaxy_image_analysis</xref> | 14 <xref type="bio.tools">galaxy_image_analysis</xref> |
23 <data name="output" format="tiff"/> | 30 <data name="output" format="tiff"/> |
24 </outputs> | 31 </outputs> |
25 <tests> | 32 <tests> |
26 <test> | 33 <test> |
27 <param name="input" value="sample_seg.tif"/> | 34 <param name="input" value="sample_seg.tif"/> |
28 <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/> | 35 <expand macro="tests/label_image_diff" name="output" value="out.tif" ftype="tiff"/> |
29 </test> | 36 </test> |
30 </tests> | 37 </tests> |
31 <help> | 38 <help> |
32 **What it does** | |
33 | 39 |
34 Takes a labeled image and outputs a similar file where the labeled parts | 40 **Splits label map using morphological operators.** |
35 of the image that touch (or overlap) are separated by at least 1 pixel (at most 2). | 41 |
42 Takes a labeled image and outputs a similar file where the labeled parts | |
43 of the image that touch (or overlap) are separated by at least 1 pixel (at most 2 pixels). | |
44 | |
36 </help> | 45 </help> |
37 <citations> | 46 <citations> |
38 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | 47 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> |
39 </citations> | 48 </citations> |
40 </tool> | 49 </tool> |