Mercurial > repos > imgteam > split_labelmap
view split_labelmap.xml @ 1:9db1c22dbe17 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/split_labelmaps/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:12:26 +0000 |
parents | 597b7ef44b05 |
children | 7a2e2e3cf836 |
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<tool id="ip_split_labelmap" name="Split label map using morphological operators" version="0.2-2"> <description></description> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="1.15.4">numpy</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/split_labelmap.py' '$input' '$output' ]]> </command> <inputs> <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image containing labels"/> </inputs> <outputs> <data name="output" format="tiff"/> </outputs> <tests> <test> <param name="input" value="sample_seg.tif"/> <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/> </test> </tests> <help> **What it does** Takes a labeled image and outputs a similar file where the labeled parts of the image that touch (or overlap) are separated by at least 1 pixel (at most 2). </help> <citations> <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> </citations> </tool>