Mercurial > repos > imgteam > spot_detection_2d
changeset 6:73efacdaf71a draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/spot_detection_2d/ commit e5a00acbad81d7a7a4ca21edf79e9f1104f44e95
| author | imgteam |
|---|---|
| date | Fri, 06 Mar 2026 18:10:51 +0000 |
| parents | e8c9e104e109 |
| children | |
| files | creators.xml spot_detection_2d.xml test-data/input1.tif test-data/input1.tiff test-data/input2.tif test-data/input2.tiff |
| diffstat | 6 files changed, 23 insertions(+), 7 deletions(-) [+] |
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--- a/creators.xml Wed Sep 25 08:19:30 2024 +0000 +++ b/creators.xml Fri Mar 06 18:10:51 2026 +0000 @@ -5,6 +5,11 @@ <yield /> </xml> + <xml name="creators/kostrykin"> + <person givenName="Leonid" familyName="Kostrykin"/> + <yield/> + </xml> + <xml name="creators/rmassei"> <person givenName="Riccardo" familyName="Massei"/> <yield/> @@ -24,5 +29,15 @@ <person givenName="Till" familyName="Korten"/> <yield/> </xml> - + + <xml name="creators/pavanvidem"> + <person givenName="Pavan" familyName="Videm"/> + <yield/> + </xml> + + <xml name="creators/tuncK"> + <person givenName="Tunc" familyName="Kayikcioglu"/> + <yield/> + </xml> + </macros>
--- a/spot_detection_2d.xml Wed Sep 25 08:19:30 2024 +0000 +++ b/spot_detection_2d.xml Fri Mar 06 18:10:51 2026 +0000 @@ -1,12 +1,10 @@ -<tool id="ip_spot_detection_2d" name="Perform 2-D spot detection" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> +<tool id="ip_spot_detection_2d" name="Perform 2-D spot detection" version="0.2" profile="20.05"> <description></description> <macros> <import>creators.xml</import> - <token name="@TOOL_VERSION@">0.1</token> - <token name="@VERSION_SUFFIX@">0</token> </macros> <creator> - <expand macro="creators/bmcv" /> + <expand macro="creators/bmcv"/> </creator> <edam_operations> <edam_operation>operation_3443</edam_operation> @@ -21,6 +19,9 @@ <requirement type="package" version="0.21">scikit-image</requirement> <requirement type="package" version="2024.6.18">tifffile</requirement> </requirements> + <required_files> + <include type="glob" path="*.py"/> + </required_files> <command detect_errors="aggressive"> <![CDATA[ python '$__tool_directory__/spot_detection_2d.py' @@ -57,7 +58,7 @@ <tests> <!-- Multi-frame input --> <test> - <param name="fn_in" value="input1.tif"/> + <param name="fn_in" value="input1.tiff"/> <param name="frame_1st" value="1"/> <param name="frame_end" value="0"/> <param name="filter_type" value="LoG"/> @@ -70,7 +71,7 @@ </test> <!-- Single-frame input --> <test> - <param name="fn_in" value="input2.tif"/> + <param name="fn_in" value="input2.tiff"/> <param name="frame_1st" value="1"/> <param name="frame_end" value="0"/> <param name="filter_type" value="LoG"/>