Mercurial > repos > imgteam > superdsm
changeset 6:79ec3263686a draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/superdsm/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:13:34 +0000 |
| parents | 9b4830300f3a |
| children | |
| files | run-superdsm.py superdsm.xml |
| diffstat | 2 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/run-superdsm.py Thu Apr 04 15:26:50 2024 +0000 +++ b/run-superdsm.py Wed Apr 24 08:13:34 2024 +0000 @@ -80,6 +80,7 @@ os.environ['MKL_NUM_THREADS'] = str(num_threads_per_process) os.environ['OPENBLAS_NUM_THREADS'] = str(num_threads_per_process) + import giatools.io import ray import superdsm.automation import superdsm.io @@ -95,7 +96,7 @@ pipeline = superdsm.pipeline.create_default_pipeline() cfg = create_config(args) - img = superdsm.io.imread(img_filepath) + img = giatools.io.imread(img_filepath, impl=superdsm.io.imread) # Create configuration if it is required: if args.do_cfg or args.do_overlay or args.do_masks:
--- a/superdsm.xml Thu Apr 04 15:26:50 2024 +0000 +++ b/superdsm.xml Wed Apr 24 08:13:34 2024 +0000 @@ -4,7 +4,7 @@ <import>creators.xml</import> <import>tests.xml</import> <token name="@TOOL_VERSION@">0.2.0</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> <creator> <expand macro="creators/bmcv"/> @@ -19,6 +19,7 @@ <requirements> <requirement type="package" version="@TOOL_VERSION@">superdsm</requirement> + <requirement type="package" version="0.1.1">giatools</requirement> <!-- Pin the dependencies to specific versions for reproducibility: