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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/visceral-evaluatesegmentation commit 6b687746bdb3d5d1fb11ecffd6dd1bf42dc2c38d
author imgteam
date Fri, 10 Nov 2023 14:23:38 +0000
parents 8c1a805c2fc5
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<tool id="ip_visceral_evaluatesegmentation" name="Evaluate segmentation" version="0.5-2">
    <description>with EvaluateSegmentation</description>
    <edam_operations>
        <edam_operation>operation_3443</edam_operation>
    </edam_operations>
    <xrefs>
        <xref type="biii">evaluatesegmentation-tool</xref>
    </xrefs>
    <requirements>
        <requirement type="package" version="2015.07.03">visceral-evaluatesegmentation</requirement>
    </requirements>
    <command>
        <![CDATA[
        EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output'
        ]]> 
    </command>
    <inputs>
        <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/>
        <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/>
    </inputs>
    <outputs>
        <data format="xml" name="output"/>
    </outputs>
    <tests>
        <test>
            <param name="gt_path" value="sample.png" />
            <param name="seg_path" value="sample.png" />
            <output name="output" value="out.xml" ftype="xml" lines_diff="15" />
        </test>
    </tests>
    <help>
    **What it does**

    Calculates Metrics for Evaluating Image Segmentation</help>
    <citations>
        <citation type="doi">10.1186/s12880-015-0068-x</citation>
    </citations>
</tool>