comparison voronoi_tessellation.py @ 2:412d7478ec92 draft

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/voronoi_tesselation commit c86a1b93cb7732f7331a981d13465653cc1a2790

1:e7fdea8385f0

import argparse

import numpy as np
import scipy.ndimage as ndi
import skimage.io
from skimage.segmentation import watershed

    parser = argparse.ArgumentParser()
    parser.add_argument('input')
    parser.add_argument('output')
    args = parser.parse_args()

    im = skimage.io.imread(args.input)
    im = im.squeeze()
    assert im.ndim == 2

    distances = np.full(im.shape, np.inf)
    for label in np.unique(im):

2:412d7478ec92

import argparse

import giatools.io
import numpy as np
import scipy.ndimage as ndi
import skimage.io
from skimage.segmentation import watershed

    parser = argparse.ArgumentParser()
    parser.add_argument('input')
    parser.add_argument('output')
    args = parser.parse_args()

    im = giatools.io.imread(args.input)
    im = im.squeeze()
    assert im.ndim == 2

    distances = np.full(im.shape, np.inf)
    for label in np.unique(im):