diff extractKeywords.xml @ 1:1d5e530c8a5e draft default tip

"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/extract_fcs_keywords commit f0a40d58aec0a657b60df338c79dc1ee8e510aa0"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/extractKeywords.xml	Mon Jun 22 17:22:21 2020 -0400
@@ -0,0 +1,69 @@
+<tool id="extract_fcs_keywords" name="Extract keywords" version="1.0+galaxy1">
+  <description>from FCS files</description>
+  <requirements>
+    <requirement type="package" version="1.42.0">bioconductor-flowcore</requirement>
+  </requirements>
+  <stdio>
+    <exit_code range="1:" />
+  </stdio>
+  <command><![CDATA[
+    Rscript $__tool_directory__/FCSKeyword.R '${input}' '${keyword_file}'
+  ]]>
+  </command>
+  <inputs>
+    <param format="fcs" name="input" type="data" label="FCS file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="keyword_file" label="Extract Keywords on ${input.name}"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="testfcs1.fcs"/>
+      <output name="keyword_file" file="out.tabular" lines_diff="2"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+   This tool extracts the Keywords from a FCS file.
+
+-----
+
+**Input files**
+
+This tool uses FCS files as input.
+
+**Output file**
+
+The list of FCS file headers is output.
+
+-----
+
+**Example**
+
+FCSversion=2
+
+$BYTEORD=4,3,2,1
+
+$DATATYPE=I
+
+$NEXTDATA=0
+
+$SYS=Macintosh System Software 9.2.2
+
+CREATOR=CELLQuest 3.3
+
+$TOT=20000
+
+$MODE=L
+
+$PAR=6
+
+$P1N=FSC-H
+
+.
+
+..
+
+...
+  ]]>
+  </help>
+</tool>