comparison FCSflowAI.xml @ 3:dd00eee6cd06 draft default tip

planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowai commit bbff20e20dc2b9dbb40b613a0d5f16ee8132446d

2:fab7c5deeb65

<tool id="flowAI" name="flowAI" version="1.0+galaxy1">
  <description> automatic quality control</description>
  <requirements>
    <requirement type="package" version="1.42.0">bioconductor-flowcore</requirement>
    <requirement type="package" version="1.2.9">bioconductor-flowai</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:" level="fatal" description="See stderr for more details."/>
  </stdio>
  <command><![CDATA[

        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_text text="total_UNIQUE"/>
          <has_size value="267939" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/>
    </test>
    <test expect_num_outputs="4">

        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_text text="total_UNIQUE"/>
          <has_size value="267939" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/>
      <output name="lowfcs" file="std/lqdata.fcs" compare="sim_size"/>
      <output name="qcfcs" file="std/alldata.fcs" compare="sim_size"/>

      <output name="full_rep">
        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_size value="268106" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="nooutliers/hqdata_nooutliers.fcs" compare="sim_size"/>
    </test>
    <test expect_num_outputs="2">

        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_text text="total_UNIQUE"/>
          <has_size value="267894" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="withsfsc/hqdata_sfsc.fcs" compare="sim_size"/>
    </test>
  </tests>

3:dd00eee6cd06

<tool id="flowAI" name="flowAI" version="1.0+galaxy2">
  <description> automatic quality control</description>
  <requirements>
    <requirement type="package" version="1.42.0">bioconductor-flowcore</requirement>
    <requirement type="package" version="1.2.9">bioconductor-flowai</requirement>
    <requirement type="package" version="0.0.1">mscorefonts</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:" level="fatal" description="See stderr for more details."/>
  </stdio>
  <command><![CDATA[

        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_text text="total_UNIQUE"/>
          <has_size value="320266" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/>
    </test>
    <test expect_num_outputs="4">

        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_text text="total_UNIQUE"/>
          <has_size value="320266" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/>
      <output name="lowfcs" file="std/lqdata.fcs" compare="sim_size"/>
      <output name="qcfcs" file="std/alldata.fcs" compare="sim_size"/>

      <output name="full_rep">
        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_size value="320433" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="nooutliers/hqdata_nooutliers.fcs" compare="sim_size"/>
    </test>
    <test expect_num_outputs="2">

        <assert_contents>
          <has_n_lines min="100" max="500"/>
          <has_text text="data:image/png;base64"/>
          <has_text text="Dynamic range check"/>
          <has_text text="total_UNIQUE"/>
          <has_size value="320220" delta="30000"/>
        </assert_contents>
      </output>
      <output name="highfcs" file="withsfsc/hqdata_sfsc.fcs" compare="sim_size"/>
    </test>
  </tests>