diff FCSstats_text.xml @ 1:715c9696dcf5 draft default tip

"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowtext_summary commit 0c146c1d2b137b710b743afa63fcda21beb92ff7"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FCSstats_text.xml	Tue Aug 04 07:51:15 2020 -0400
@@ -0,0 +1,55 @@
+<tool id="get_txt_fcs_stats" name="Get summary" version="1.0+galaxy1">
+  <description>of txt-converted FCS files</description>
+  <requirements>
+    <requirement type="package" version="0.17.1">pandas</requirement>
+  </requirements>
+  <stdio>
+    <exit_code range="2:" level="fatal" description="See stderr for more details." />
+  </stdio>
+  <command><![CDATA[
+      python '$__tool_directory__/FCSstats_txt.py' -i '${input}' -o '${output}'
+  ]]>
+  </command>
+  <inputs>
+    <param format="flowtext,txt,tabular" name="input" type="data" label="txt-converted FCS file"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output" label="Summary statisitics of ${input.name}"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="input.flowtext"/>
+      <output name="output" file="output.tabular"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+   This tool generates a summary of a txt-converted FCS file and list of markers.
+
+-----
+
+**Input file**
+
+This tool uses txt-converted FCS files as input.
+
+**Output file**
+
+File summary includes number of events, list of markers and parameters, and summary statistics for each.
+
+-----
+
+**Example**
+
+*Output*::
+
+        FSC    SSC    CD4   CCR3   CD8    CCR4
+   mean 475.4  413.4  288.8 157.9  218.1  179.6
+   std  165.2  390.7  199.9 117.3  201.7  95.7
+   min  261.0  18.0   0.0   0.0    0.0	   0.0
+   25%  354.0  121.0  112.0 65.0   58.0   109.0
+   50%  398.0  167.0  209.0 159.0  180.0  179.0
+   75%  609.0  951.2  512.0 237.0  275.0  245.0
+   max  1023.0 1023.0 775.0 1023.0 1023.0 841.0
+   20000 events
+  ]]>
+  </help>
+</tool>