diff FCSstats_txt.py @ 1:715c9696dcf5 draft default tip

"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowtext_summary commit 0c146c1d2b137b710b743afa63fcda21beb92ff7"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FCSstats_txt.py	Tue Aug 04 07:51:15 2020 -0400
@@ -0,0 +1,43 @@
+#!/usr/bin/env python
+
+######################################################################
+#                  Copyright (c) 2016 Northrop Grumman.
+#                          All rights reserved.
+######################################################################
+
+from __future__ import print_function
+import pandas as pd
+from argparse import ArgumentParser
+
+
+def get_txt_stats(in_file, out_file):
+    df = pd.read_table(in_file)
+    summary = df.describe().round(1)
+    df1 = summary[1:]
+    x = summary[:1].values.tolist()
+    df1.to_csv(out_file, sep="\t")
+    with open(out_file, "a") as ot:
+        ot.write("\n\n" + str(int(x[0][0])) + " events\n")
+    return
+
+
+if __name__ == "__main__":
+    parser = ArgumentParser(
+             prog="getTxtStats",
+             description="Prints summary statistics from given file.")
+
+    parser.add_argument(
+            '-i',
+            dest="input_file",
+            required=True,
+            help="File location for the text file.")
+
+    parser.add_argument(
+            '-o',
+            dest="output_file",
+            required=True,
+            help="Name of the output file.")
+
+    args = parser.parse_args()
+
+    get_txt_stats(args.input_file, args.output_file)