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annotate README.rst @ 1:08042588bd02 draft

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"planemo upload commit 2fed2858d4044a3897a93a5604223d1d183ceac0-dirty"
author immuneml
date Thu, 01 Jul 2021 13:37:27 +0000
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children 9bf78cb6b91d
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1 Galaxy tool wrappers for immuneML.
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2 ==================================
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3
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4 Installation
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5 ============
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6 You will need to define a new datatype, which is done as follows:
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8 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set
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10 ``datatypes_config_file: datatypes_conf.xml``
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12 2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined.
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13 3. Add the following line to your ``datatypes_config_file``:
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15 ``<datatype extension="iml_dataset" type="galaxy.datatypes.text:Html" subclass="True"/>``
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16 The line has to be inside ``<registration>`` along with the other datatypes.
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17
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18 The immuneML conda package
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19 ==========================
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20 Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes.