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author immuneml
date Thu, 01 Jul 2021 13:37:27 +0000
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1 Galaxy tool wrappers for immuneML.
2 ==================================
3
4 Installation
5 ============
6 You will need to define a new datatype, which is done as follows:
7
8 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set
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10 ``datatypes_config_file: datatypes_conf.xml``
11
12 2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined.
13 3. Add the following line to your ``datatypes_config_file``:
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15 ``<datatype extension="iml_dataset" type="galaxy.datatypes.text:Html" subclass="True"/>``
16 The line has to be inside ``<registration>`` along with the other datatypes.
17
18 The immuneML conda package
19 ==========================
20 Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes.