Mercurial > repos > immuneml > immuneml_tools
comparison README.rst @ 1:08042588bd02 draft
"planemo upload commit 2fed2858d4044a3897a93a5604223d1d183ceac0-dirty"
| author | immuneml |
|---|---|
| date | Thu, 01 Jul 2021 13:37:27 +0000 |
| parents | |
| children | 9bf78cb6b91d |
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| 1 Galaxy tool wrappers for immuneML. | |
| 2 ================================== | |
| 3 | |
| 4 Installation | |
| 5 ============ | |
| 6 You will need to define a new datatype, which is done as follows: | |
| 7 | |
| 8 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set | |
| 9 | |
| 10 ``datatypes_config_file: datatypes_conf.xml`` | |
| 11 | |
| 12 2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined. | |
| 13 3. Add the following line to your ``datatypes_config_file``: | |
| 14 | |
| 15 ``<datatype extension="iml_dataset" type="galaxy.datatypes.text:Html" subclass="True"/>`` | |
| 16 The line has to be inside ``<registration>`` along with the other datatypes. | |
| 17 | |
| 18 The immuneML conda package | |
| 19 ========================== | |
| 20 Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes. |