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comparison immuneml_train_recept.xml @ 19:051d349fdc8c draft default tip

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"planemo upload commit 5ffe9db26c26d30c923c812b69346d95948e9cd0"
author immuneml
date Tue, 05 Apr 2022 10:11:52 +0000
parents cd57c1c66f8b
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18:697c2b98a466 19:051d349fdc8c
184 184
185 - Archive: receptor classification: a .zip file containing the complete output folder as it was produced by immuneML. This folder 185 - Archive: receptor classification: a .zip file containing the complete output folder as it was produced by immuneML. This folder
186 contains the output of the TrainMLModel instruction including all trained models and their predictions, and report results. 186 contains the output of the TrainMLModel instruction including all trained models and their predictions, and report results.
187 Furthermore, the folder contains the complete YAML specification file for the immuneML run, the HTML output and a log file. 187 Furthermore, the folder contains the complete YAML specification file for the immuneML run, the HTML output and a log file.
188 188
189 - optimal_ml_settings.zip: a .zip file containing the raw files for the optimal trained ML settings (ML model, encoding). 189 - optimal_ml_settings.zip: a .zip file containing the raw files for the optimal trained ML settings (ML model, encoding). This .zip file can subsequently be used as an input when applying previously trained ML models to a new dataset. Currently, this can only be done locally using the command-line interface.
190 This .zip file can subsequently be used as an input when `applying previously trained ML models to a new AIRR dataset in Galaxy <https://docs.immuneml.uio.no/latest/galaxy/galaxy_apply_ml_models.html>`_.
191 190
192 - receptor_classification.yaml: the YAML specification file that was used by immuneML internally to run the analysis. This file can be 191 - receptor_classification.yaml: the YAML specification file that was used by immuneML internally to run the analysis. This file can be
193 downloaded, altered, and run again by immuneML using the `Train machine learning models <root?tool_id=immuneml_train_ml_model>`_ Galaxy tool. 192 downloaded, altered, and run again by immuneML using the `Train machine learning models <root?tool_id=immuneml_train_ml_model>`_ Galaxy tool.
194 193
195 **More analysis options** 194 **More analysis options**