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comparison immuneml_train_repert.xml @ 19:051d349fdc8c draft default tip

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"planemo upload commit 5ffe9db26c26d30c923c812b69346d95948e9cd0"
author immuneml
date Tue, 05 Apr 2022 10:11:52 +0000
parents cd57c1c66f8b
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18:697c2b98a466 19:051d349fdc8c
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214 - Archive: repertoire classification: a .zip file containing the complete output folder as it was produced by immuneML. This folder 214 - Archive: repertoire classification: a .zip file containing the complete output folder as it was produced by immuneML. This folder
215 contains the output of the TrainMLModel instruction including all trained models and their predictions, and report results. 215 contains the output of the TrainMLModel instruction including all trained models and their predictions, and report results.
216 Furthermore, the folder contains the complete YAML specification file for the immuneML run, the HTML output and a log file. 216 Furthermore, the folder contains the complete YAML specification file for the immuneML run, the HTML output and a log file.
217 217
218 - optimal_ml_settings.zip: a .zip file containing the raw files for the optimal trained ML settings (ML model, encoding). 218 - optimal_ml_settings.zip: a .zip file containing the raw files for the optimal trained ML settings (ML model, encoding). This .zip file can subsequently be used as an input when applying previously trained ML models to a new dataset. Currently, this can only be done locally using the command-line interface.
219 This .zip file can subsequently be used as an input when `applying previously trained ML models to a new AIRR dataset in Galaxy <https://docs.immuneml.uio.no/latest/galaxy/galaxy_apply_ml_models.html>`_.
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221 - repertoire_classification.yaml: the YAML specification file that was used by immuneML internally to run the analysis. This file can be 220 - repertoire_classification.yaml: the YAML specification file that was used by immuneML internally to run the analysis. This file can be
222 downloaded, altered, and run again by immuneML using the `Train machine learning models <root?tool_id=immuneml_train_ml_model>`_ Galaxy tool. 221 downloaded, altered, and run again by immuneML using the `Train machine learning models <root?tool_id=immuneml_train_ml_model>`_ Galaxy tool.
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224 **More analysis options** 223 **More analysis options**