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Dependencies
============
The tools rely on immuneML version 2.0.1 or newer. 

Installation: datatype
======================
You will need to define a new datatype ``immuneml_receptors``, which is done as follows:

1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set

``datatypes_config_file: datatypes_conf.xml``

2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined.
3. Add the following line to your ``datatypes_config_file``:

``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>``
The line has to be inside ``<registration>`` along with the other datatypes.

Installation: The immuneML package
==================================
Conda installation of immuneML typically takes several minutes. There is general information about Galaxy's dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html