view README.rst @ 8:65815d4754e5 draft

"planemo upload commit 8aef44a2b3bc8fc00a1efe0ce7ecab83eded053f-dirty"

The tools rely on immuneML version 2.0.1 or newer.

Installation
============
You will need to define a new datatype ``immuneml_receptors``, which is done as follows:

1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set

``datatypes_config_file: datatypes_conf.xml``

2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined.
3. Add the following line to your ``datatypes_config_file``:

``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>``
The line has to be inside ``<registration>`` along with the other datatypes.

The immuneML package
====================
Conda installation of immuneML typically takes several minutes. There is general information about Galaxy dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html